Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02013 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 7.2e-30 133.3 68 100.0
Sopen09g029140 Solanum pennellii HOM05D002663 ORTHO05D002988 3.0e-12 74.7 53 62.3
Sabra15G0051000 Salix brachista HOM05D002663 ORTHO05D002988 8.8e-12 73.2 44 75.0
Sabra15G0054700 Salix brachista HOM05D002663 ORTHO05D002988 8.8e-12 73.2 44 75.0
Sabra15G0061200 Salix brachista HOM05D002663 ORTHO05D002988 8.8e-12 73.2 44 75.0
Potri.015G042100 Populus trichocarpa HOM05D002663 ORTHO05D002988 1.2e-11 72.8 44 75.0
vmacro02520 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 1.2e-11 72.8 47 74.5
CAN.G806.1 Capsicum annuum HOM05D002663 ORTHO05D002988 2.0e-11 72.0 47 68.1
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.0e-11 72.0 47 68.1
Atru.chr5.1301_Atru.chr5.1302 Acer truncatum HOM05D002663 ORTHO05D002988 2.6e-11 71.6 46 69.6
Cfa006059 Carpinus fangiana HOM05D002663 ORTHO05D002988 2.6e-11 71.6 44 75.0
Solyc09g074310.3 Solanum lycopersicum HOM05D002663 ORTHO05D002988 3.4e-11 71.2 47 68.1
Haze_04793 Corylus avellana HOM05D002663 ORTHO05D002988 5.7e-11 70.5 44 72.7
PGSC0003DMG400016854 Solanum tuberosum HOM05D002663 ORTHO05D002988 5.7e-11 70.5 47 68.1
Eucgr.K03423 Eucalyptus grandis HOM05D002663 ORTHO05D002988 7.5e-11 70.1 50 66.0
Nitab4.5_0010231g0020 Nicotiana tabacum HOM05D002663 ORTHO05D002988 7.5e-11 70.1 47 66.0
Sc24g0004040 Simmondsia chinensis HOM05D002663 ORTHO05D002988 9.8e-11 69.7 50 62.0
Thecc.01G288300 Theobroma cacao HOM05D002663 ORTHO05D002988 9.8e-11 69.7 45 66.7
Gohir.A11G118800 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.3e-10 69.3 41 70.7
Gohir.D11G123700 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.3e-10 69.3 41 70.7
Gorai.007G132600 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.3e-10 69.3 41 70.7
PGR044G1923 Punica granatum HOM05D002663 ORTHO05D002988 1.3e-10 69.3 45 68.9
TAR362G0766 Trochodendron aralioides HOM05D002663 ORTHO05D002988 1.7e-10 68.9 46 67.4
Phvul.002G245400 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 2.2e-10 68.6 44 70.5
RcHm_v2.0_Chr6g0292291 Rosa chinensis HOM05D002663 ORTHO05D002988 2.2e-10 68.6 44 70.5
CDE05G0856 Ceratophyllum demersum HOM05D000039 ORTHO05D002988 2.8e-10 68.2 50 58.0
CDE05G2057 Ceratophyllum demersum HOM05D002663 ORTHO05D002988 2.8e-10 68.2 50 58.0
Cc01_g20050 Coffea canephora HOM05D002663 ORTHO05D002988 2.8e-10 68.2 47 66.0
Rhsim13G0018700 Rhododendron simsii HOM05D002663 ORTHO05D002988 2.8e-10 68.2 47 70.2
ClCG05G012270 Citrullus lanatus HOM05D002663 ORTHO05D002988 3.7e-10 67.8 56 55.4
FAN20G1839 Fragaria x ananassa HOM05D000115 ORTHO05D001535 3.7e-10 67.8 51 60.8
MD11G1296300 Malus domestica HOM05D002663 ORTHO05D002988 3.7e-10 67.8 44 68.2
Sed0012646 Sechium edule HOM05D002663 ORTHO05D002988 3.7e-10 67.8 44 65.9
FvH4_2g24450 Fragaria vesca HOM05D002663 ORTHO05D002988 4.8e-10 67.4 44 68.2
FAN24G0935 Fragaria x ananassa HOM05D002663 ORTHO05D002988 4.8e-10 67.4 44 68.2
FAN27G1532 Fragaria x ananassa HOM05D002663 ORTHO05D002988 4.8e-10 67.4 44 68.2
Hma1.2p1_1651F.1_g295770 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 4.8e-10 67.4 47 68.1
Manes.05G070100 Manihot esculenta HOM05D002663 ORTHO05D002988 4.8e-10 67.4 44 68.2
Prupe.8G250200 Prunus persica HOM05D002663 ORTHO05D002988 4.8e-10 67.4 44 70.5
TPR.G6748 Trifolium pratense HOM05D002663 ORTHO05D002988 4.8e-10 67.4 48 62.5
MBI19_g25933_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 6.3e-10 67.0 46 65.2
TWI14G0131 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 6.3e-10 67.0 41 73.2
Ca_17862_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 8.3e-10 66.6 44 68.2
Dinv11283 Davidia involucrata HOM05D002663 ORTHO05D002988 8.3e-10 66.6 47 68.1
QL12p023424 Quercus lobata HOM05D002663 ORTHO05D002988 8.3e-10 66.6 56 58.9
Hund05368 Selenicereus undatus HOM05D002663 ORTHO05D002988 8.3e-10 66.6 50 62.0
CANSAT25G2471 Cannabis sativa HOM05D002663 ORTHO05D002988 1.1e-09 66.2 56 58.9
Glyma.08G122600 Glycine max HOM05D002663 ORTHO05D002988 1.1e-09 66.2 44 68.2
HanXRQChr11g0334821 Helianthus annuus HOM05D002663 ORTHO05D002988 1.1e-09 66.2 47 68.1
Medtr8g088160 Medicago truncatula HOM05D002663 ORTHO05D002988 1.1e-09 66.2 46 65.2
ATR0487G012 Amborella trichopoda HOM05D002663 ORTHO05D002988 1.4e-09 65.9 47 66.0
AUR62036670 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.4e-09 65.9 51 66.7
Glyma.05G165200 Glycine max HOM05D002663 ORTHO05D002988 1.4e-09 65.9 44 68.2
Lj4g0008753 Lotus japonicus HOM05D002663 ORTHO05D002988 1.4e-09 65.9 46 67.4
SalBow2G2285 Salvia bowleyana HOM05D002663 ORTHO05D002988 1.4e-09 65.9 37 78.4
VMungo0251G0385 Vigna mungo HOM05D002663 ORTHO05D002988 1.4e-09 65.9 44 68.2
EL10Ac8g19575 Beta vulgaris HOM05D002663 ORTHO05D002988 1.8e-09 65.5 50 58.0
AUR62034595 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.8e-09 65.5 61 57.4
AUR62042296 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.8e-09 65.5 51 64.7
CsaV3_3G020180 Cucumis sativus L. HOM05D002663 ORTHO05D002988 3.1e-09 64.7 56 55.4
Cpa.g.sc9.146 Carica papaya HOM05D002663 ORTHO05D002988 4.1e-09 64.3 44 65.9
MELO3C023740.2 Cucumis melo HOM05D002663 ORTHO05D002988 4.1e-09 64.3 56 53.6
DCAR_018373 Daucus carota HOM05D002663 ORTHO05D002988 4.1e-09 64.3 47 63.8
FAN20G1908 Fragaria x ananassa HOM05D002663 ORTHO05D002988 4.1e-09 64.3 44 65.9
Lalb_Chr13g0295491 Lupinus albus HOM05D002663 ORTHO05D002988 4.1e-09 64.3 44 68.2
Ah.08g212770 Amaranthus hybridus HOM05D002663 ORTHO05D002988 5.4e-09 63.9 37 75.7
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 7.0e-09 63.5 46 63.0
AUR62036674 Chenopodium quinoa HOM05D002663 ORTHO05D002988 9.1e-09 63.2 61 55.7
AUR62044300 Chenopodium quinoa HOM05D002663 ORTHO05D002988 9.1e-09 63.2 61 55.7
Os11g0645200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 9.1e-09 63.2 47 61.7
EL10Ac5g11662 Beta vulgaris HOM05D002663 ORTHO05D002988 2.0e-08 62.0 61 52.5
Lj1A40T82 Lonicera japonica HOM05D002663 ORTHO05D002988 2.0e-08 62.0 47 59.6
unitig_744.g24628 Utricularia gibba HOM05D002663 ORTHO05D002988 2.0e-08 62.0 44 65.9
arahy.Tifrunner.gnm1.ann1.IMR5XM Arachis hypogaea HOM05D002663 ORTHO05D002988 2.7e-08 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.JDYV4L Arachis hypogaea HOM05D002663 ORTHO05D002988 2.7e-08 61.6 44 63.6
CiPaw.07G098000 Carya illinoinensis HOM05D002663 ORTHO05D002988 2.7e-08 61.6 44 65.9
Oeu001452.1 Olea europaea HOM05D002663 ORTHO05D002988 2.7e-08 61.6 41 68.3
Mapoly0131s0005 Marchantia polymorpha HOM05D002663 ORTHO05D002988 3.5e-08 61.2 47 61.7
Peaxi162Scf00006g03625 Petunia axillaris HOM05D002663 ORTHO05D002988 5.9e-08 60.5 77 45.5
HPP92_011329 Vanilla planifolia HOM05D002663 ORTHO05D002988 7.7e-08 60.1 46 58.7
ECA248G0286 Erigeron canadensis HOM05D002663 ORTHO05D002988 1.0e-07 59.7 47 61.7
Aqoxy2G03158 Aquilegia oxysepala HOM05D002663 ORTHO05D002988 2.3e-07 58.5 43 60.5
Migut.N02124 Erythranthe guttata HOM05D002663 ORTHO05D002988 2.3e-07 58.5 41 63.4
SMO236G0130 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 2.9e-07 58.2 46 56.5
AagrBONN_evm.TU.Sc2ySwM_228.654 Anthoceros agrestis HOM05D002663 ORTHO05D002988 1.5e-06 55.8 47 51.1
Pp3c21_17600 Physcomitrium patens HOM05D002663 ORTHO05D002988 1.9e-06 55.5 47 57.4
Cre03.g195050 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 4.2e-06 54.3 47 57.4


User provided reference genes

Program Settings