Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.9e-28 127.5 68 100.0
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 2.9e-15 84.7 64 68.8
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.5e-14 82.4 64 65.6
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.9e-14 82.0 64 64.1
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 3.2e-14 81.3 65 67.7
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 7.2e-14 80.1 64 62.5
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 7.2e-14 80.1 65 63.1
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 7.2e-14 80.1 64 64.1
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 9.4e-14 79.7 64 64.1
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 9.4e-14 79.7 64 67.2
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 9.4e-14 79.7 64 67.2
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.2e-13 79.3 64 64.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.2e-13 79.3 64 64.1
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-13 79.0 64 65.6
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 64.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.1e-13 78.6 63 63.5
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.1e-13 78.6 65 61.5
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 62.5
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 65.6
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 64.1
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 65.6
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 2.1e-13 78.6 64 65.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.7e-13 78.2 64 65.6
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 2.7e-13 78.2 64 65.6
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 3.6e-13 77.8 64 64.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 3.6e-13 77.8 64 64.1
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 59.4
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 4.7e-13 77.4 65 61.5
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 4.7e-13 77.4 64 62.5
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 60.9
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 62.5
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 62.5
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 62.5
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 64.1
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 60.9
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 60.9
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 60.9
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 6.1e-13 77.0 64 60.9
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 8.0e-13 76.6 64 65.6
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 8.0e-13 76.6 64 62.5
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 8.0e-13 76.6 64 64.1
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 8.0e-13 76.6 64 59.4
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.0e-12 76.3 64 64.1
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 1.0e-12 76.3 63 60.3
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.0e-12 76.3 64 62.5
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 64.1
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 64.1
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 64.1
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 64.1
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 60.9
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 62.5
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.4e-12 75.9 64 59.4
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.8e-12 75.5 64 62.5
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.8e-12 75.5 64 60.9
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.8e-12 75.5 64 62.5
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.8e-12 75.5 64 59.4
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.3e-12 75.1 64 59.4
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.3e-12 75.1 64 62.5
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.3e-12 75.1 64 60.9
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.3e-12 75.1 64 60.9
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.3e-12 75.1 64 60.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 3.0e-12 74.7 63 58.7
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 3.0e-12 74.7 64 60.9
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.0e-12 74.7 64 62.5
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 3.0e-12 74.7 64 62.5
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 3.0e-12 74.7 64 60.9
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.0e-12 74.3 64 59.4
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 4.0e-12 74.3 64 62.5
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 4.0e-12 74.3 64 60.9
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 4.0e-12 74.3 64 57.8
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 5.2e-12 73.9 64 60.9
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 5.2e-12 73.9 64 60.9
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 6.8e-12 73.6 63 58.7
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 6.8e-12 73.6 64 59.4
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 6.8e-12 73.6 64 59.4
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 6.8e-12 73.6 64 56.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 6.8e-12 73.6 64 60.9
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 8.8e-12 73.2 64 59.4
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 8.8e-12 73.2 64 59.4
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 8.8e-12 73.2 64 60.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 8.8e-12 73.2 64 57.8
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 8.8e-12 73.2 64 57.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.2e-11 72.8 64 60.9
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.2e-11 72.8 64 57.8
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.5e-11 72.4 64 59.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 2.6e-11 71.6 64 57.8
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 5.7e-11 70.5 64 56.2
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 7.5e-11 70.1 64 56.2
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.2e-10 68.6 67 55.2
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 4.8e-10 67.4 64 54.7
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-09 65.9 56 62.5
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 5.4e-09 63.9 63 47.6
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 5.4e-09 63.9 84 46.4
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 7.0e-09 63.5 64 53.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.6e-08 62.4 63 54.0
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.3e-07 59.3 50 64.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.5e-06 55.1 49 57.1


User provided reference genes

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