Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 3.5e-155 551.6 277 100.0
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 5.5e-76 288.5 275 54.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.7e-75 286.2 252 55.2
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.7e-75 286.2 256 55.9
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.7e-75 286.2 280 53.6
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.5e-75 285.8 250 56.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.5e-75 285.8 268 54.1
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 4.6e-75 285.4 275 52.0
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 4.6e-75 285.4 275 52.0
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 4.6e-75 285.4 275 52.0
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 4.6e-75 285.4 250 56.8
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 7.9e-75 284.6 252 55.2
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.0e-74 284.3 258 55.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.0e-74 284.3 250 57.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.8e-74 283.5 252 54.8
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.3e-74 283.1 255 56.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.3e-74 283.1 257 54.9
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.0e-74 282.7 273 53.8
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.0e-74 282.7 273 53.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 3.0e-74 282.7 275 53.8
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.9e-74 282.3 252 54.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.9e-74 282.3 249 54.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.9e-74 282.3 249 54.6
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 5.1e-74 282.0 252 54.0
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 6.7e-74 281.6 260 53.5
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.1e-73 280.8 250 54.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-73 280.8 258 55.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.1e-73 280.8 273 53.5
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.5e-73 280.4 249 54.6
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.5e-73 280.4 249 55.0
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 4.3e-73 278.9 258 54.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.3e-73 278.9 251 55.4
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.6e-73 278.5 251 55.0
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 5.6e-73 278.5 274 51.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 5.6e-73 278.5 252 54.4
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 9.6e-73 277.7 258 54.7
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 9.6e-73 277.7 253 54.2
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 9.6e-73 277.7 276 52.2
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-72 277.3 258 54.7
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.6e-72 276.9 278 52.5
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.6e-72 276.9 254 55.5
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.1e-72 276.6 249 56.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 3.7e-72 275.8 273 52.7
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.7e-72 275.8 265 55.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-72 275.8 258 54.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 4.8e-72 275.4 249 56.6
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 6.2e-72 275.0 271 52.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 6.2e-72 275.0 254 53.9
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 8.1e-72 274.6 273 52.4
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 8.1e-72 274.6 253 54.2
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-71 274.2 258 53.9
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.1e-71 274.2 248 55.2
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.8e-71 273.5 249 55.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.8e-71 273.5 253 53.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.8e-71 273.5 271 52.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.8e-71 273.5 270 53.0
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.1e-71 272.7 246 54.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.0e-71 272.3 260 52.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.0e-71 272.3 256 52.7
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.2e-70 270.8 276 53.6
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.5e-70 270.4 256 52.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 2.6e-70 269.6 258 52.3
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.4e-70 269.2 256 51.6
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 5.8e-70 268.5 287 48.4
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.2e-69 266.5 241 54.8
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 4.9e-69 265.4 269 50.9
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 6.5e-69 265.0 282 50.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.9e-68 263.5 266 50.4
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.5e-68 263.1 248 51.2
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 4.2e-68 262.3 255 52.9
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.5e-68 261.9 250 53.6
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 7.1e-68 261.5 301 47.2
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 7.1e-68 261.5 256 50.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.1e-67 260.0 239 56.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.7e-67 259.6 278 48.9
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 6.0e-67 258.5 246 51.6
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.0e-67 258.5 288 48.6
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.8e-66 256.9 269 50.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 5.1e-66 255.4 252 51.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.5e-65 253.1 259 51.0
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.3e-65 252.3 251 52.6
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 7.4e-65 251.5 186 62.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.5e-62 243.8 267 47.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.0e-62 243.4 257 49.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.2e-61 240.0 250 47.6
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 5.0e-61 238.8 256 48.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 5.0e-61 238.8 253 48.2
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.2e-60 235.0 274 47.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 6.1e-59 231.9 169 63.3
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.3e-58 230.7 187 58.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.3e-56 224.2 271 48.0
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.2e-56 223.4 214 51.9
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.7e-56 222.6 276 46.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.9e-55 218.4 245 49.8
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.4e-54 216.1 278 45.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 4.2e-52 209.1 268 42.9
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 2.1e-51 206.8 263 43.7
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.5e-49 200.7 273 42.1
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.3e-49 199.1 280 42.9
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.7e-49 198.7 272 43.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.4e-47 194.1 273 42.9
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.1e-47 192.6 258 40.7
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 5.3e-47 192.2 248 44.8
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-46 189.9 298 40.6
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.9e-46 188.7 245 42.4
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.0e-45 188.0 279 41.2
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.2e-45 186.8 272 42.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 6.5e-45 185.3 270 42.6
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 6.1e-43 178.7 255 40.4
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.0e-39 165.2 172 48.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.9e-37 159.8 177 46.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 8.5e-37 158.3 296 35.8
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.2e-36 156.0 288 37.8
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.6e-33 146.7 162 45.7
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.7e-29 134.0 221 36.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.6e-27 127.5 129 51.9
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.7e-25 119.0 238 31.5
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-24 117.1 85 64.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.1e-19 100.5 76 63.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-18 95.1 131 42.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-17 94.7 93 45.2
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.1e-15 88.2 190 33.7
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.8e-13 79.7 157 31.8
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 4.0e-10 69.7 98 37.8
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.6e-09 67.0 54 57.4
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.2e-07 58.5 44 59.1
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.6e-06 56.2 84 34.5


User provided reference genes

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