Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 9.4e-54 213.8 107 100.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.6e-13 79.0 106 45.3
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.2e-13 78.2 106 45.3
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.1e-12 77.4 84 47.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.8e-12 76.6 105 42.9
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.1e-12 75.9 83 51.8
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 8.9e-12 74.3 107 46.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.2e-11 73.9 53 66.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.5e-11 73.6 42 78.6
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.0e-11 73.2 90 44.4
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.4e-11 72.4 104 41.3
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.4e-11 72.0 108 44.4
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.4e-11 72.0 93 49.5
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 5.8e-11 71.6 98 44.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 9.9e-11 70.9 43 72.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 9.9e-11 70.9 43 72.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 9.9e-11 70.9 43 72.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 9.9e-11 70.9 45 71.1
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.3e-10 70.5 45 66.7
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-10 70.5 81 50.6
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.7e-10 70.1 55 61.8
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.7e-10 70.1 107 42.1
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.7e-10 70.1 79 48.1
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.7e-10 70.1 43 67.4
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.7e-10 70.1 88 46.6
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 2.2e-10 69.7 52 61.5
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.2e-10 69.7 113 38.1
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-10 69.7 108 43.5
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.2e-10 69.7 108 43.5
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 2.2e-10 69.7 68 52.9
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.2e-10 69.7 63 55.6
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.9e-10 69.3 41 70.7
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.9e-10 69.3 95 46.3
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.9e-10 69.3 42 69.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.9e-10 69.3 62 54.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.9e-10 69.3 43 72.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.9e-10 69.3 52 61.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 3.8e-10 68.9 91 48.4
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.8e-10 68.9 72 55.6
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 3.8e-10 68.9 84 48.8
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 4.9e-10 68.6 107 42.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.4e-10 67.8 36 80.6
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 8.4e-10 67.8 105 41.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.4e-10 67.8 43 69.8
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.4e-10 67.8 43 69.8
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-09 67.4 110 44.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-09 67.4 104 42.3
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-09 67.4 104 42.3
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.1e-09 67.4 104 42.3
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.1e-09 67.4 79 49.4
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.1e-09 67.4 71 53.5
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.1e-09 67.4 97 39.2
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.1e-09 67.4 42 66.7
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.4e-09 67.0 87 42.5
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.4e-09 67.0 108 39.8
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.4e-09 67.0 59 50.8
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.4e-09 67.0 42 69.0
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.9e-09 66.6 83 50.6
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-09 66.6 39 74.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.9e-09 66.6 41 68.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.9e-09 66.6 101 39.6
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.4e-09 66.2 105 42.9
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 2.4e-09 66.2 86 45.3
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.4e-09 66.2 102 43.1
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 3.2e-09 65.9 39 71.8
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.2e-09 65.9 43 67.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 3.2e-09 65.9 105 42.9
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.2e-09 65.9 106 42.5
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 4.1e-09 65.5 104 41.3
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.1e-09 65.5 48 56.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 4.1e-09 65.5 87 44.8
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 4.1e-09 65.5 113 42.5
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.1e-09 65.5 91 41.8
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 7.1e-09 64.7 39 69.2
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 7.1e-09 64.7 35 77.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 7.1e-09 64.7 62 51.6
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.2e-09 64.3 43 60.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 9.2e-09 64.3 43 65.1
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 9.2e-09 64.3 37 75.7
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 9.2e-09 64.3 43 65.1
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 9.2e-09 64.3 36 75.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.2e-08 63.9 38 71.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-08 63.9 43 62.8
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.2e-08 63.9 37 73.0
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.6e-08 63.5 41 68.3
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.1e-08 63.2 66 54.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.1e-08 63.2 43 58.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.1e-08 63.2 43 65.1
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.7e-08 62.8 104 41.3
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.7e-08 62.8 46 63.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.7e-08 62.8 40 67.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.7e-08 62.8 46 63.0
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 3.5e-08 62.4 43 65.1
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.6e-08 62.0 106 41.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.6e-08 62.0 36 69.4
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 6.0e-08 61.6 113 34.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 6.0e-08 61.6 41 63.4
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 6.0e-08 61.6 56 51.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-07 60.8 108 38.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.0e-07 60.8 46 60.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.0e-07 60.8 38 68.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.0e-07 60.8 49 59.2
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.0e-07 60.8 36 69.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-07 60.8 106 47.2
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.7e-07 60.1 87 41.4
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.7e-07 60.1 43 60.5
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.3e-07 59.7 35 68.6
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.3e-07 59.7 84 44.0
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.0e-07 59.3 35 68.6
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.0e-07 59.3 35 68.6
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 3.0e-07 59.3 35 68.6
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 5.1e-07 58.5 69 49.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 5.1e-07 58.5 79 40.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 6.6e-07 58.2 64 48.4
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 6.6e-07 58.2 55 52.7
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.5e-06 57.0 40 60.0
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.5e-06 56.2 39 61.5
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 5.6e-06 55.1 108 36.1


User provided reference genes

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