Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01524 Sequoiadendron giganteum HOM05D007470 ORTHO05D009337 8.2e-97 357.1 182 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2376 Anthoceros agrestis HOM05D007470 ORTHO05D009337 1.9e-24 116.7 84 69.0
Pp3c3_25680 Physcomitrium patens HOM05D007470 ORTHO05D009337 1.2e-23 114.0 84 65.5
ClCG11G009420 Citrullus lanatus HOM05D007470 ORTHO05D009337 3.5e-23 112.5 94 58.5
Mapoly0035s0112 Marchantia polymorpha HOM05D007470 ORTHO05D009337 4.6e-23 112.1 84 61.9
Sed0023625 Sechium edule HOM05D007470 ORTHO05D009337 7.8e-23 111.3 91 59.3
CBR_g57502 Chara braunii HOM05D007470 ORTHO05D009337 1.0e-22 110.9 84 64.3
Dinv38225 Davidia involucrata HOM05D007470 ORTHO05D009337 1.9e-21 106.7 94 55.3
CsaV3_2G034020 Cucumis sativus L. HOM05D007470 ORTHO05D009337 2.5e-21 106.3 84 61.9
MELO3C008174.2 Cucumis melo HOM05D007470 ORTHO05D009337 3.3e-21 105.9 84 61.9
Lj7A611T38 Lonicera japonica HOM05D007470 ORTHO05D009337 7.3e-21 104.8 90 57.8
MBI11_g05336_MAGBIO Magnolia biondii HOM05D007470 ORTHO05D009337 7.3e-21 104.8 104 52.9
DCAR_019191 Daucus carota HOM05D007470 ORTHO05D009337 1.6e-20 103.6 84 60.7
Os11g0490800 Oryza sativa ssp. japonica HOM05D007470 ORTHO05D009337 1.6e-20 103.6 94 54.3
TAR629G2381 Trochodendron aralioides HOM05D007470 ORTHO05D009337 1.6e-20 103.6 84 61.9
CDE05G3681 Ceratophyllum demersum HOM05D007470 ORTHO05D009337 2.1e-20 103.2 84 60.7
PSO017G3529 Papaver somniferum HOM05D007470 ORTHO05D009337 2.8e-20 102.8 84 58.3
MD17G1001700 Malus domestica HOM05D007470 ORTHO05D009337 3.6e-20 102.4 84 59.5
PSO478G1374 Papaver somniferum HOM05D007470 ORTHO05D009337 3.6e-20 102.4 84 58.3
ATR0088G051 Amborella trichopoda HOM05D007470 ORTHO05D009337 4.8e-20 102.1 84 63.1
CANSAT64G2994 Cannabis sativa HOM05D007470 ORTHO05D009337 4.8e-20 102.1 84 59.5
Potri.017G067804 Populus trichocarpa HOM05D007470 ORTHO05D009337 4.8e-20 102.1 84 58.3
Sabra17G0058800 Salix brachista HOM05D007470 ORTHO05D009337 6.2e-20 101.7 84 57.1
SGA_v2.0_scaffold253G45183 Striga asiatica HOM05D007470 ORTHO05D009337 6.2e-20 101.7 87 57.5
Cc02_g35820 Coffea canephora HOM05D007470 ORTHO05D009337 1.1e-19 100.9 84 59.5
Aqoxy3G01589 Aquilegia oxysepala HOM05D007470 ORTHO05D009337 1.4e-19 100.5 84 60.7
CiPaw.03G057800 Carya illinoinensis HOM05D007470 ORTHO05D009337 1.4e-19 100.5 84 58.3
Manes.11G086800 Manihot esculenta HOM05D007470 ORTHO05D009337 1.4e-19 100.5 94 52.1
QL02p070898 Quercus lobata HOM05D007470 ORTHO05D009337 1.4e-19 100.5 84 58.3
Prupe.3G308400 Prunus persica HOM05D007470 ORTHO05D009337 1.8e-19 100.1 84 58.3
Haze_14895 Corylus avellana HOM05D007470 ORTHO05D009337 3.1e-19 99.4 84 58.3
Peaxi162Scf00304g00836 Petunia axillaris HOM05D007470 ORTHO05D009337 3.1e-19 99.4 84 59.5
Solyc02g068180.3 Solanum lycopersicum HOM05D007470 ORTHO05D009337 3.1e-19 99.4 84 58.3
Sopen02g017280 Solanum pennellii HOM05D007470 ORTHO05D009337 3.1e-19 99.4 84 58.3
HanXRQChr17g0551531 Helianthus annuus HOM05D007470 ORTHO05D009337 4.0e-19 99.0 84 59.5
Lsat_1_v5_gn_0_3201 Lactuca sativa HOM05D007470 ORTHO05D009337 4.0e-19 99.0 84 59.5
Nitab4.5_0010271g0010 Nicotiana tabacum HOM05D007470 ORTHO05D009337 4.0e-19 99.0 84 58.3
Nn3g16402 Nelumbo nucifera HOM05D007470 ORTHO05D009337 5.3e-19 98.6 84 58.3
GSVIVG01033060001 Vitis vinifera HOM05D007470 ORTHO05D009337 5.3e-19 98.6 84 59.5
Actinidia36214 Actinidia chinensis HOM05D007470 ORTHO05D009337 6.9e-19 98.2 84 59.5
CAN.G1525.7 Capsicum annuum HOM05D007470 ORTHO05D009337 6.9e-19 98.2 84 58.3
COL.COLO4_13289 Corchorus olitorius HOM05D007470 ORTHO05D009337 6.9e-19 98.2 84 58.3
CSS0012152 Camellia sinensis var. sinensis HOM05D007470 ORTHO05D009337 9.0e-19 97.8 84 57.1
Zm00001eb112830 Zea mays HOM05D007470 ORTHO05D009337 9.0e-19 97.8 94 52.1
MSTRG.3067 Avicennia marina HOM05D007470 ORTHO05D009337 1.2e-18 97.4 84 57.1
ECA246G0009 Erigeron canadensis HOM05D007470 ORTHO05D009337 1.2e-18 97.4 84 57.1
TWI34G0784 Tripterygium wilfordii HOM05D007470 ORTHO05D009337 2.0e-18 96.7 84 57.1
TWI34G1845 Tripterygium wilfordii HOM05D007470 ORTHO05D009337 2.0e-18 96.7 84 57.1
arahy.Tifrunner.gnm1.ann1.WUC6HZ Arachis hypogaea HOM05D007470 ORTHO05D009337 2.6e-18 96.3 84 57.1
arahy.Tifrunner.gnm1.ann1.Y5JERX Arachis hypogaea HOM05D007470 ORTHO05D009337 2.6e-18 96.3 84 57.1
Migut.F00049 Erythranthe guttata HOM05D007470 ORTHO05D009337 2.6e-18 96.3 84 54.8
Atru.chr6.2593 Acer truncatum HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 54.8
Gohir.A10G071600 Gossypium hirsutum HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 56.0
Lalb_Chr08g0235091 Lupinus albus HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 56.0
Phvul.001G088400 Phaseolus vulgaris HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 56.0
RcHm_v2.0_Chr2g0175931 Rosa chinensis HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 57.1
TPR.G8551 Trifolium pratense HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 56.0
vmacro05972 Vaccinium macrocarpon HOM05D007470 ORTHO05D009337 3.4e-18 95.9 84 58.3
Medtr7g028600 Medicago truncatula HOM05D007470 ORTHO05D009337 4.5e-18 95.5 84 56.0
SalBow4G2156 Salvia bowleyana HOM05D007470 ORTHO05D009337 4.5e-18 95.5 84 53.6
Ciclev10016219m.g Citrus clementina HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 56.0
Gohir.D10G079400 Gossypium hirsutum HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 56.0
Lj1g0008589 Lotus japonicus HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 56.0
Nitab4.5_0000760g0070 Nicotiana tabacum HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 56.0
Nitab4.5_0003376g0110 Nicotiana tabacum HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 56.0
Psat3g162680 Pisum sativum HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 54.8
Thecc.04G040000 Theobroma cacao HOM05D007470 ORTHO05D009337 5.8e-18 95.1 84 54.8
FAN02G0284 Fragaria x ananassa HOM05D007470 ORTHO05D009337 7.6e-18 94.7 84 56.0
FvH4_6g53800 Fragaria vesca HOM05D007470 ORTHO05D009337 9.9e-18 94.4 84 56.0
Gorai.011G086500 Gossypium raimondii HOM05D007470 ORTHO05D009337 9.9e-18 94.4 84 54.8
Glyma.19G094500 Glycine max HOM05D007470 ORTHO05D009337 1.7e-17 93.6 84 54.8
unitig_0.g1935 Utricularia gibba HOM05D007470 ORTHO05D009337 2.2e-17 93.2 84 53.6
Eucgr.I01631 Eucalyptus grandis HOM05D007470 ORTHO05D009337 3.8e-17 92.4 84 54.8
CSS0031207 Camellia sinensis var. sinensis HOM05D007470 ORTHO05D009337 1.9e-16 90.1 81 54.3
AT5G14100 Arabidopsis thaliana HOM05D007470 ORTHO05D009337 3.2e-16 89.4 84 53.6
BraA10t44499Z Brassica rapa HOM05D007470 ORTHO05D009337 3.2e-16 89.4 84 53.6
AL6G24760 Arabidopsis lyrata HOM05D007470 ORTHO05D009337 5.4e-16 88.6 84 53.6
C09p63010 Brassica napus HOM05D007470 ORTHO05D009337 9.3e-16 87.8 84 52.4
AUR62029418 Chenopodium quinoa HOM05D007470 ORTHO05D009337 9.3e-16 87.8 84 51.2
Sp6g29900 Schrenkiella parvula HOM05D007470 ORTHO05D009337 9.3e-16 87.8 84 52.4
BcaB08g36958 Brassica carinata HOM05D007470 ORTHO05D009337 1.2e-15 87.4 84 52.4
BcaC04g19060 Brassica carinata HOM05D007470 ORTHO05D009337 1.2e-15 87.4 84 52.4
Carub.0006s1229 Capsella rubella HOM05D007470 ORTHO05D009337 1.2e-15 87.4 84 52.4
CARHR199250 Cardamine hirsuta HOM05D007470 ORTHO05D009337 1.2e-15 87.4 84 52.4
Thhalv10014315m.g Eutrema salsugineum HOM05D007470 ORTHO05D009337 1.2e-15 87.4 84 52.4
AUR62003423 Chenopodium quinoa HOM05D007470 ORTHO05D009337 1.6e-15 87.0 84 50.0
Aa31LG11G14900 Aethionema arabicum HOM05D007470 ORTHO05D009337 2.1e-15 86.7 90 51.1
Psat7g092720 Pisum sativum HOM05D007470 ORTHO05D009337 2.1e-15 86.7 84 53.6
A10p24330 Brassica napus HOM05D007470 ORTHO05D009337 2.7e-15 86.3 84 51.2
BolC9t59139H Brassica oleracea HOM05D002467 ORTHO05D009337 4.6e-15 85.5 89 51.7
MCO14G275 Micromonas commoda HOM05D007470 ORTHO05D009337 1.6e-12 77.0 84 48.8
Sc03g0006360 Simmondsia chinensis HOM05D007470 ORTHO05D009337 8.1e-12 74.7 69 56.5
SMO367G1290 Selaginella moellendorffii HOM05D007470 ORTHO05D009337 1.1e-11 74.3 68 52.9
Cpa.g.sc70.121 Carica papaya HOM05D007470 ORTHO05D009337 5.3e-11 72.0 78 50.0
VMungo1383G3071 Vigna mungo HOM05D000808 ORTHO05D009337 2.0e-10 70.1 68 51.5
CDE05G2906 Ceratophyllum demersum HOM05D007470 ORTHO05D009337 4.5e-10 68.9 64 53.1
Cre16.g687550 Chlamydomonas reinhardtii HOM05D007470 ORTHO05D009337 2.9e-09 66.2 84 44.0
Nitab4.5_0001892g0140 Nicotiana tabacum HOM05D007470 ORTHO05D009337 4.9e-09 65.5 41 73.2
PRCOL_00005302 Prasinoderma coloniale HOM05D007470 ORTHO05D009337 2.1e-07 60.1 86 41.9
Lj7A611G40 Lonicera japonica HOM05D007470 ORTHO05D009337 1.8e-06 57.0 33 81.8


User provided reference genes

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