Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01502 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.4e-191 670.6 347 100.0
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 4.7e-69 265.8 204 72.1
SEGI_11294 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 8.1e-61 238.4 181 69.1
SEGI_17099 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.4e-58 228.8 254 53.1
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 1.2e-51 208.0 286 43.0
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 1.2e-48 198.0 260 45.4
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 4.3e-46 189.5 245 46.9
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 7.4e-46 188.7 256 45.7
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 1.3e-45 188.0 250 46.0
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 1.6e-45 187.6 246 45.5
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 2.1e-45 187.2 246 44.3
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 2.1e-45 187.2 266 44.0
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 2.8e-45 186.8 260 45.4
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 3.7e-45 186.4 260 43.8
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 3.7e-45 186.4 319 41.7
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 4.8e-45 186.0 260 44.2
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 6.2e-45 185.7 259 43.2
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 8.1e-45 185.3 259 43.2
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 1.1e-44 184.9 255 43.1
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 2.4e-44 183.7 226 48.2
Gohir.A01G063200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 2.4e-44 183.7 251 45.0
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 3.1e-44 183.3 260 44.6
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 4.0e-44 183.0 260 44.2
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 5.3e-44 182.6 264 44.3
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 5.3e-44 182.6 264 44.3
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 5.3e-44 182.6 255 44.7
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 9.0e-44 181.8 252 45.2
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 9.0e-44 181.8 254 45.7
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 1.2e-43 181.4 259 41.3
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 2.0e-43 180.6 246 45.9
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 2.0e-43 180.6 231 45.5
Rhsim04G0021600 Rhododendron simsii HOM05D002373 ORTHO05D005805 2.0e-43 180.6 200 49.5
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 2.6e-43 180.3 255 43.9
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 2.6e-43 180.3 255 44.7
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 2.6e-43 180.3 251 44.2
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 2.6e-43 180.3 259 42.1
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 2.6e-43 180.3 259 42.1
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 3.4e-43 179.9 259 40.9
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 3.4e-43 179.9 251 44.2
GSVIVG01014319001 Vitis vinifera HOM05D002373 ORTHO05D005805 3.4e-43 179.9 221 47.1
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 4.5e-43 179.5 265 41.9
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 4.5e-43 179.5 250 41.6
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 4.5e-43 179.5 259 43.6
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 4.5e-43 179.5 256 44.5
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 5.8e-43 179.1 255 45.1
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 5.8e-43 179.1 250 46.0
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 7.6e-43 178.7 260 43.1
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 1.0e-42 178.3 260 42.7
Solyc07g063080.4 Solanum lycopersicum HOM05D002373 ORTHO05D005805 1.0e-42 178.3 262 40.8
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.3e-42 177.9 259 42.1
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 1.3e-42 177.9 255 42.7
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 1.3e-42 177.9 253 43.9
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 1.3e-42 177.9 261 43.3
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 1.7e-42 177.6 313 39.3
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.7e-42 177.6 251 44.2
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 1.7e-42 177.6 262 43.9
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 1.7e-42 177.6 253 43.5
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 2.2e-42 177.2 252 44.0
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 2.2e-42 177.2 252 44.0
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 2.2e-42 177.2 256 44.5
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 2.9e-42 176.8 249 43.8
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 3.8e-42 176.4 245 44.5
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 3.8e-42 176.4 265 42.3
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 1.1e-41 174.9 265 42.3
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 1.1e-41 174.9 261 42.5
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.1e-41 174.9 261 42.5
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 1.1e-41 174.9 248 43.5
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 1.1e-41 174.9 262 42.0
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 1.1e-41 174.9 251 43.0
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 1.4e-41 174.5 245 43.7
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 1.9e-41 174.1 186 50.0
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 1.9e-41 174.1 203 50.2
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 1.9e-41 174.1 273 41.0
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 1.9e-41 174.1 251 44.2
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 2.5e-41 173.7 289 38.8
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 3.2e-41 173.3 216 45.4
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 4.2e-41 172.9 228 43.4
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 4.2e-41 172.9 186 49.5
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 4.2e-41 172.9 186 50.5
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 4.2e-41 172.9 228 43.4
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 4.2e-41 172.9 259 42.1
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 4.2e-41 172.9 259 41.7
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 4.2e-41 172.9 269 41.3
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 5.5e-41 172.6 255 42.4
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 5.5e-41 172.6 255 42.4
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 5.5e-41 172.6 261 42.1
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 5.5e-41 172.6 191 49.2
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 9.3e-41 171.8 260 43.5
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 9.3e-41 171.8 228 43.4
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 9.3e-41 171.8 186 51.6
Lalb_Chr01g0016821 Lupinus albus HOM05D002373 ORTHO05D005805 1.2e-40 171.4 256 41.8
Oeu024908.1 Olea europaea HOM05D002373 ORTHO05D005805 1.2e-40 171.4 283 39.6
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 1.6e-40 171.0 288 39.9
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 1.6e-40 171.0 245 42.9
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.6e-40 171.0 260 40.4
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 2.1e-40 170.6 261 41.8
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 2.1e-40 170.6 255 39.6
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 2.7e-40 170.2 228 43.0
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 2.7e-40 170.2 290 39.7
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.5e-40 169.9 247 42.9
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 6.0e-40 169.1 222 45.0
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 7.9e-40 168.7 289 38.1
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 7.9e-40 168.7 288 39.6
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 7.9e-40 168.7 313 38.3
BraA01t02609Z Brassica rapa HOM05D002373 ORTHO05D005805 1.3e-39 167.9 186 48.9
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 1.3e-39 167.9 251 42.6
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 1.8e-39 167.5 315 37.8
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 2.3e-39 167.2 288 38.5
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 3.0e-39 166.8 222 44.1
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 6.7e-39 165.6 186 49.5
SEGI_17035 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.7e-39 165.6 121 71.9
MSTRG.12902 Avicennia marina HOM05D002373 ORTHO05D005805 1.1e-38 164.9 267 40.4
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 1.5e-38 164.5 186 47.8
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 3.3e-38 163.3 238 42.0
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 4.3e-38 162.9 265 40.8
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 4.3e-38 162.9 264 41.3
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.1e-36 158.3 248 41.5
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 3.1e-36 156.8 252 38.9
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 3.1e-36 156.8 252 38.9
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 3.1e-36 156.8 252 38.9
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 3.1e-36 156.8 252 38.9
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 3.1e-36 156.8 186 47.3
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 1.2e-35 154.8 248 41.5
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 2.6e-35 153.7 191 47.6
A01p26800 Brassica napus HOM05D002373 ORTHO05D005805 3.4e-35 153.3 210 43.3
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 3.2e-33 146.7 289 36.3
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 1.2e-32 144.8 186 46.8
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 3.1e-28 130.2 137 51.8
Dinv20180 Davidia involucrata HOM05D002373 ORTHO05D005805 2.6e-27 127.1 126 53.2
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 1.9e-25 120.9 237 39.2
CDE10G0423 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.1e-24 117.5 137 48.9
BcaB02g10931 Brassica carinata HOM05D002373 ORTHO05D005805 7.9e-24 115.5 177 41.8
CDE10G1360 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 1.4e-23 114.8 137 48.9
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 2.3e-23 114.0 187 36.9
MD11G1249600 Malus domestica HOM05D002373 ORTHO05D005805 1.1e-22 111.7 172 44.2
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 5.9e-19 99.4 276 31.5
Aqoxy1G02769 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 5.5e-17 92.8 116 46.6
Cre12.g529450 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D005805 1.2e-16 91.7 187 36.4
SEGI_17365 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 3.0e-15 87.0 44 90.9
arahy.Tifrunner.gnm1.ann1.B0SKQG Arachis hypogaea HOM05D000980 ORTHO05D000649 6.3e-13 79.3 121 42.1
Actinidia35247 Actinidia chinensis HOM05D002373 ORTHO05D005805 1.0e-10 72.0 103 42.7
BcaB02g10932 Brassica carinata HOM05D002373 ORTHO05D005805 1.9e-09 67.8 184 32.1
SEGI_20978 Sequoiadendron giganteum HOM05D009239 ORTHO05D012700 5.5e-09 66.2 77 42.9
HanXRQChr12g0364191 Helianthus annuus HOM05D002373 ORTHO05D005805 9.4e-09 65.5 43 62.8
SEGI_36376 Sequoiadendron giganteum HOM05D009239 ORTHO05D006039 1.6e-08 64.7 110 39.1
SEGI_22261 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.1e-08 62.8 96 36.5
SEGI_22621 Sequoiadendron giganteum HOM05D002347 ORTHO05D014789 6.1e-08 62.8 96 36.5
SEGI_35341 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.1e-08 62.8 96 36.5
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 8.0e-08 62.4 69 46.4
SEGI_39373 Sequoiadendron giganteum HOM05D000031 ORTHO05D012700 8.0e-08 62.4 121 35.5
SEGI_15569 Sequoiadendron giganteum HOM05D001792 ORTHO05D001821 1.8e-07 61.2 96 40.6
SEGI_28364 Sequoiadendron giganteum HOM05D000032 ORTHO05D004701 5.2e-07 59.7 114 35.1
SEGI_34008 Sequoiadendron giganteum HOM05D000140 ORTHO05D008077 8.8e-07 58.9 70 44.3
SEGI_33233 Sequoiadendron giganteum HOM05D000038 ORTHO05D000689 1.5e-06 58.2 100 37.0
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.4e-06 56.6 64 43.8
SEGI_34830 Sequoiadendron giganteum HOM05D000121 ORTHO05D000102 7.5e-06 55.8 77 41.6


User provided reference genes

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