Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.4e-87 326.6 215 100.0
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 4.4e-49 198.7 144 77.8
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 5.8e-17 92.0 115 46.1
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 4.2e-15 85.9 118 44.1
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 4.2e-15 85.9 113 46.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 9.3e-15 84.7 115 41.7
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 2.1e-14 83.6 117 41.0
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 2.7e-14 83.2 117 39.3
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 4.6e-14 82.4 113 41.6
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.0e-13 81.3 115 39.1
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 1.8e-13 80.5 115 40.0
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 3.0e-13 79.7 117 39.3
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 3.0e-13 79.7 117 39.3
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 3.9e-13 79.3 115 40.0
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 5.1e-13 79.0 115 39.1
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 5.1e-13 79.0 113 40.7
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 6.7e-13 78.6 115 40.0
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 1.1e-12 77.8 115 38.3
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.1e-12 77.8 115 38.3
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 1.5e-12 77.4 115 38.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 1.5e-12 77.4 115 39.1
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 1.9e-12 77.0 117 40.2
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 4.3e-12 75.9 115 40.0
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 7.4e-12 75.1 115 37.4
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 7.4e-12 75.1 115 37.4
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 9.6e-12 74.7 117 39.3
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 9.6e-12 74.7 115 36.5
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 2.1e-11 73.6 117 36.8
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 2.8e-11 73.2 115 37.4
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 2.8e-11 73.2 115 38.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.6e-11 72.8 115 36.5
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 3.6e-11 72.8 114 37.7
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 3.6e-11 72.8 127 39.4
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 4.8e-11 72.4 126 34.9
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 6.2e-11 72.0 115 33.9
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 6.2e-11 72.0 115 34.8
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 8.1e-11 71.6 115 37.4
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 1.1e-10 71.2 120 35.8
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.1e-10 71.2 119 33.6
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 1.1e-10 71.2 119 33.6
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 1.4e-10 70.9 115 39.1
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 1.4e-10 70.9 115 34.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 1.8e-10 70.5 115 35.7
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 1.8e-10 70.5 115 35.7
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 1.8e-10 70.5 123 36.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.8e-10 70.5 122 39.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 2.4e-10 70.1 132 34.1
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 2.4e-10 70.1 112 36.6
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 3.1e-10 69.7 115 34.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 3.1e-10 69.7 115 33.9
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 3.1e-10 69.7 126 37.3
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 3.1e-10 69.7 118 33.9
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 5.3e-10 68.9 121 33.9
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 5.3e-10 68.9 114 35.1
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.9e-10 68.6 133 33.1
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 6.9e-10 68.6 133 32.3
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.9e-10 68.6 117 34.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 9.0e-10 68.2 115 34.8
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 9.0e-10 68.2 115 37.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.2e-09 67.8 115 36.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 1.5e-09 67.4 120 38.3
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 1.5e-09 67.4 114 33.3
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 2.0e-09 67.0 132 34.8
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 4.5e-09 65.9 133 31.6
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 4.5e-09 65.9 91 40.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 5.8e-09 65.5 116 36.2
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 7.6e-09 65.1 116 37.1
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 9.9e-09 64.7 116 36.2
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 1.3e-08 64.3 116 37.1
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 1.3e-08 64.3 111 37.8
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.2e-08 63.5 115 33.9
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 2.9e-08 63.2 116 37.1
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 4.9e-08 62.4 117 36.8
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 6.4e-08 62.0 117 34.2
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 6.4e-08 62.0 110 33.6
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 8.4e-08 61.6 112 41.1
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 1.1e-07 61.2 115 33.0
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 1.1e-07 61.2 116 32.8
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.1e-07 61.2 114 35.1
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 1.4e-07 60.8 117 33.3
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.9e-07 60.5 118 33.9
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 1.9e-07 60.5 139 33.1
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.9e-07 60.5 109 35.8
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 2.4e-07 60.1 118 33.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 2.4e-07 60.1 124 36.3
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 2.4e-07 60.1 117 34.2
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 3.2e-07 59.7 115 32.2
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 3.2e-07 59.7 118 33.9
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 3.2e-07 59.7 114 34.2
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 4.2e-07 59.3 115 31.3
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 5.5e-07 58.9 118 32.2
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 4.6e-06 55.8 111 32.4


User provided reference genes

Program Settings