Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 5.0e-122 441.0 210 100.0
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 5.9e-99 364.4 212 80.2
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.0e-98 363.6 206 79.6
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.7e-98 362.8 211 78.2
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 3.3e-97 358.6 204 78.9
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 79.8
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.2e-97 358.2 202 80.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 4.2e-97 358.2 208 81.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 9.5e-97 357.1 208 79.3
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 4.7e-96 354.8 204 80.9
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.7e-96 354.8 208 79.3
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 4.7e-96 354.8 208 80.3
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 6.1e-96 354.4 209 78.9
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 8.0e-96 354.0 204 77.5
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 8.0e-96 354.0 209 78.5
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 8.0e-96 354.0 208 78.4
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.4e-95 353.2 209 78.5
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 1.8e-95 352.8 206 76.7
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.3e-95 352.4 209 78.5
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 4.0e-95 351.7 207 77.8
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 4.0e-95 351.7 197 82.2
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 5.2e-95 351.3 203 79.3
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 6.8e-95 350.9 210 75.7
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 6.8e-95 350.9 208 80.8
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 80.3
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.2e-94 350.1 205 75.6
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.6e-94 349.0 204 78.4
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 3.4e-94 348.6 212 77.4
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 3.4e-94 348.6 208 78.8
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.4e-94 348.6 204 77.9
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.4e-94 348.6 208 77.9
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.4e-94 348.2 204 77.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.8e-94 347.1 202 79.7
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 9.8e-94 347.1 207 77.3
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 9.8e-94 347.1 204 78.4
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 9.8e-94 347.1 208 77.9
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.7e-93 346.3 208 78.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.7e-93 345.1 210 76.7
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.9e-93 344.7 208 77.4
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 4.9e-93 344.7 204 78.9
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 4.9e-93 344.7 204 78.9
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 4.9e-93 344.7 204 78.9
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 8.3e-93 344.0 208 78.4
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-92 343.6 208 77.4
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.1e-92 343.6 203 77.3
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.1e-92 343.6 204 77.9
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 4.1e-92 341.7 204 77.9
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 9.2e-92 340.5 209 74.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 9.2e-92 340.5 204 77.5
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.6e-91 339.7 209 75.6
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.6e-91 339.7 209 75.6
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 2.0e-91 339.3 204 77.0
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 2.0e-91 339.3 204 76.5
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.7e-91 339.0 208 76.0
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 2.7e-91 339.0 207 76.3
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 2.7e-91 339.0 204 76.5
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 76.0
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.5e-91 338.2 204 77.0
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 5.9e-91 337.8 210 74.8
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 7.8e-91 337.4 193 79.8
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.0e-90 337.0 231 71.0
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.0e-90 337.0 200 77.0
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.0e-90 337.0 207 75.8
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.0e-90 337.0 210 75.2
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.0e-90 337.0 204 76.0
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.0e-90 337.0 210 74.3
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.3e-90 336.7 207 73.9
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.3e-90 336.7 208 75.5
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.7e-90 336.3 204 75.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.7e-90 336.3 207 75.8
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.7e-90 336.3 204 77.0
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.3e-90 335.9 202 76.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.3e-90 335.9 211 73.9
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 3.9e-90 335.1 202 75.2
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.0e-90 334.7 204 77.0
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 5.0e-90 334.7 208 74.5
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 8.6e-90 334.0 209 73.7
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.1e-89 333.6 204 74.5
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.1e-89 333.6 208 73.6
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.1e-89 333.6 204 75.5
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.1e-89 333.6 208 74.5
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 2.5e-89 332.4 208 74.5
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 2.5e-89 332.4 208 73.1
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.3e-89 332.0 204 74.5
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.3e-89 330.9 204 75.0
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.3e-89 330.9 204 75.0
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 7.3e-89 330.9 199 75.4
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 9.5e-89 330.5 201 76.6
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 9.5e-89 330.5 220 73.6
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.2e-88 330.1 200 75.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.2e-88 330.1 204 76.0
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.2e-88 330.1 209 72.7
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.1e-88 329.3 204 74.5
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.1e-88 329.3 208 73.1
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.1e-88 329.3 204 74.5
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.8e-88 328.9 208 72.6
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 4.7e-88 328.2 208 73.1
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 4.7e-88 328.2 208 73.1
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 6.1e-88 327.8 208 72.6
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.0e-88 327.4 200 75.0
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.0e-87 327.0 208 72.1
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.0e-87 327.0 209 72.7
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.4e-87 326.6 200 75.0
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.0e-87 325.1 200 74.5
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 6.8e-87 324.3 200 74.5
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 6.8e-87 324.3 209 72.7
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.2e-86 323.6 224 68.3
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.5e-86 323.2 204 71.6
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 2.0e-86 322.8 206 72.3
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 5.4e-84 314.7 294 56.5
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 3.6e-80 302.0 248 62.1
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-79 300.1 203 67.5
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 3.1e-79 298.9 166 81.9
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 6.8e-79 297.7 205 70.7
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 6.8e-79 297.7 203 67.0
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.9e-77 292.4 169 80.5
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.9e-77 292.4 201 68.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 6.4e-77 291.2 173 79.8
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.1e-72 276.2 171 74.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.9e-66 255.4 423 38.8
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.4e-63 246.1 211 57.3
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 3.1e-63 245.7 145 77.2
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.5e-62 243.4 145 75.9
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 1.3e-61 240.4 145 75.2
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 6.0e-59 231.5 137 76.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.2e-51 207.2 113 81.4
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 7.6e-46 188.0 189 47.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.2e-45 186.4 195 46.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 6.0e-43 178.3 125 67.2
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 6.0e-43 178.3 201 44.8
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.1e-41 174.1 108 76.9
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 2.2e-37 159.8 184 46.2
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.9e-36 156.8 84 81.0
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 2.4e-31 139.8 74 83.8
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.1e-31 139.4 96 69.8
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 5.0e-29 132.1 95 66.3
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 5.0e-29 132.1 79 77.2
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 2.0e-17 93.6 67 65.7
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.3e-16 90.9 74 58.1
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.7e-16 90.5 59 72.9
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 6.3e-16 88.6 67 62.7
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.2e-16 88.2 53 77.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 5.7e-09 65.5 40 80.0
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.2e-08 63.5 49 59.2
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.1e-07 61.2 35 74.3
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.1e-07 59.7 59 55.9
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.5e-06 56.2 32 81.2


User provided reference genes

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