Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 2.3e-169 599.0 334 100.0
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 5.2e-97 358.6 328 62.5
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 5.7e-96 355.1 328 61.6
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 5.4e-94 348.6 325 60.9
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 2.0e-93 346.7 332 59.3
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 4.5e-93 345.5 328 59.5
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 4.5e-93 345.5 331 60.1
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 4.5e-93 345.5 327 60.6
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 7.7e-93 344.7 332 59.3
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 5.0e-92 342.0 328 60.1
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 6.5e-92 341.7 337 58.5
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 8.5e-92 341.3 331 58.3
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 3.2e-91 339.3 334 58.4
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 4.2e-91 339.0 327 57.2
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 5.5e-91 338.6 327 56.9
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 1.6e-90 337.0 328 59.5
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 4.7e-90 335.5 336 56.8
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 4.7e-90 335.5 328 59.1
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 1.5e-88 330.5 334 57.8
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 2.0e-88 330.1 333 56.8
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 2.6e-88 329.7 334 57.5
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 2.6e-88 329.7 328 57.0
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 9.8e-88 327.8 328 56.7
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 9.8e-88 327.8 327 56.6
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.7e-87 327.0 332 56.6
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 4.9e-87 325.5 328 55.8
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 6.3e-87 325.1 333 56.8
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 6.3e-87 325.1 332 54.8
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 1.1e-86 324.3 328 57.0
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 2.4e-86 323.2 329 57.1
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 5.4e-86 322.0 349 53.3
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 7.0e-86 321.6 331 55.9
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 7.0e-86 321.6 328 57.6
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 9.2e-86 321.2 332 56.3
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 1.6e-85 320.5 328 58.2
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 2.7e-85 319.7 345 54.2
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 4.5e-85 318.9 327 57.5
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 5.9e-85 318.5 332 55.7
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 7.7e-85 318.2 331 56.5
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 1.7e-84 317.0 331 55.6
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.7e-84 317.0 339 55.2
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 2.3e-84 316.6 331 55.6
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 6.6e-84 315.1 328 54.3
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 8.6e-84 314.7 332 55.7
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 1.5e-83 313.9 328 55.5
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 1.9e-83 313.5 331 54.4
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 2.5e-83 313.2 328 55.2
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 5.6e-83 312.0 330 55.8
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 7.3e-83 311.6 334 54.2
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 1.2e-82 310.8 327 55.4
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 1.6e-82 310.5 345 54.5
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 1.6e-82 310.5 334 55.4
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 8.0e-82 308.1 335 54.3
Atru.chr12.1551 Acer truncatum HOM05D003412 ORTHO05D003962 2.3e-81 306.6 275 61.5
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 5.2e-81 305.4 332 54.8
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 8.9e-81 304.7 315 54.9
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 1.5e-80 303.9 334 54.8
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 5.7e-80 302.0 330 55.5
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 5.7e-80 302.0 329 53.5
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 7.5e-80 301.6 328 54.3
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 9.8e-80 301.2 335 54.0
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 1.7e-79 300.4 334 54.5
CAN.G1248.24 Capsicum annuum HOM05D003412 ORTHO05D003962 1.4e-78 297.4 271 59.0
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 1.8e-78 297.0 345 53.9
Phvul.007G204500 Phaseolus vulgaris HOM05D003412 ORTHO05D003962 2.4e-78 296.6 274 60.6
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 3.2e-78 296.2 331 52.3
Gohir.A13G113600 Gossypium hirsutum HOM05D003412 ORTHO05D003962 4.1e-78 295.8 279 60.2
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 7.0e-78 295.0 332 52.1
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 1.2e-77 294.3 329 54.1
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 2.0e-77 293.5 334 53.9
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 2.7e-77 293.1 333 51.4
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 4.6e-77 292.4 330 53.0
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 3.0e-76 289.7 334 51.2
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 8.6e-76 288.1 329 52.6
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 1.1e-75 287.7 333 53.5
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.1e-75 287.7 328 51.8
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.5e-75 287.3 328 51.2
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 9.5e-75 284.6 339 50.1
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 1.2e-74 284.3 328 52.4
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.6e-74 283.9 330 51.2
Peaxi162Scf00357g00017 Petunia axillaris HOM05D003412 ORTHO05D003962 8.0e-74 281.6 288 55.9
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 3.1e-73 279.6 381 45.9
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 5.2e-73 278.9 330 50.9
Cc02_g35780 Coffea canephora HOM05D003412 ORTHO05D003962 5.2e-73 278.9 272 57.0
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 4.4e-72 275.8 328 50.9
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 5.8e-72 275.4 330 50.3
Oeu000100.1 Olea europaea HOM05D003412 ORTHO05D003962 2.2e-71 273.5 271 56.8
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 3.7e-71 272.7 326 51.2
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 4.9e-71 272.3 351 49.3
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 4.9e-71 272.3 328 49.1
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 3.2e-70 269.6 328 50.3
MBI18_g09639_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.2e-70 269.6 332 50.0
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 4.1e-70 269.2 334 49.4
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 5.4e-70 268.9 323 50.8
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 2.0e-69 266.9 327 48.6
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 3.5e-69 266.2 328 50.3
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 4.6e-69 265.8 329 48.9
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 3.0e-68 263.1 328 50.6
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 3.0e-68 263.1 332 47.6
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 3.0e-68 263.1 327 50.2
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 3.9e-68 262.7 350 48.0
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.6e-66 257.3 332 46.7
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 6.2e-66 255.4 345 47.8
Lalb_Chr04g0260311 Lupinus albus HOM05D003412 ORTHO05D003962 6.2e-66 255.4 327 49.2
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 1.1e-65 254.6 332 46.7
Lju99C6G3 Lonicera japonica HOM05D003412 ORTHO05D003962 1.4e-65 254.2 330 48.8
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 4.0e-65 252.7 329 48.6
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 5.2e-65 252.3 274 55.8
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 6.8e-65 251.9 328 47.6
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 8.9e-65 251.5 329 48.6
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 2.6e-64 250.0 328 47.0
FvH4_6g08410 Fragaria vesca HOM05D003412 ORTHO05D003962 2.6e-64 250.0 272 54.8
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 2.6e-64 250.0 332 45.8
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 4.4e-64 249.2 332 46.1
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 7.5e-64 248.4 332 47.3
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 8.3e-63 245.0 328 46.6
SGA_v2.0_scaffold117G32404 Striga asiatica HOM05D003412 ORTHO05D003962 2.4e-62 243.4 331 45.0
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 6.6e-60 235.3 275 52.0
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 2.5e-59 233.4 328 45.4
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 5.6e-59 232.3 329 45.6
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 7.3e-59 231.9 334 46.7
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 2.8e-58 229.9 331 44.1
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 1.1e-57 228.0 333 45.0
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 1.8e-57 227.3 327 46.5
Lj9C230G11 Lonicera japonica HOM05D003412 ORTHO05D003962 3.1e-57 226.5 315 46.3
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 3.1e-57 226.5 336 46.4
C05p07470 Brassica napus HOM05D003412 ORTHO05D003962 4.0e-57 226.1 334 45.2
Hund21837 Selenicereus undatus HOM05D003412 ORTHO05D003962 6.8e-57 225.3 246 50.0
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 1.2e-56 224.6 331 46.2
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 1.5e-56 224.2 334 44.9
unitig_22.g5801 Utricularia gibba HOM05D003412 ORTHO05D003962 1.5e-56 224.2 334 43.1
Sed0017632 Sechium edule HOM05D003412 ORTHO05D003962 2.0e-56 223.8 274 51.1
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 2.6e-56 223.4 329 45.9
BraA06t23830Z Brassica rapa HOM05D003412 ORTHO05D003962 1.7e-55 220.7 339 44.5
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 2.9e-55 219.9 329 46.2
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 6.4e-55 218.8 329 45.6
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 3.2e-54 216.5 329 45.9
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 5.4e-54 215.7 328 43.6
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 5.4e-54 215.7 328 43.6
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 5.4e-54 215.7 339 42.5
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 1.6e-53 214.2 328 43.9
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 3.5e-53 213.0 328 43.6
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 4.6e-53 212.6 333 43.8
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 7.8e-53 211.8 328 43.6
Aqoxy5G02790 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 1.7e-52 210.7 307 44.6
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 2.3e-52 210.3 332 42.5
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 6.6e-52 208.8 329 43.2
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 1.9e-51 207.2 272 46.3
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 4.3e-51 206.1 248 49.6
BolC5t29502H Brassica oleracea HOM05D003412 ORTHO05D003962 7.3e-51 205.3 334 43.1
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 1.6e-50 204.1 329 43.2
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 2.1e-50 203.8 327 40.1
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 4.7e-50 202.6 329 41.9
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 3.1e-49 199.9 329 41.6
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 3.1e-49 199.9 329 40.4
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.2e-48 198.0 327 40.4
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 2.6e-48 196.8 329 40.4
BolC9t53547H Brassica oleracea HOM05D003412 ORTHO05D003962 3.4e-48 196.4 279 44.8
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 5.8e-48 195.7 328 41.5
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 2.2e-47 193.7 329 41.0
Dinv30940 Davidia involucrata HOM05D003412 ORTHO05D003962 6.4e-47 192.2 152 67.8
Hma1.2p1_3841F.1_g337660 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 8.4e-47 191.8 302 43.4
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 8.4e-47 191.8 366 39.1
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 5.4e-46 189.1 328 40.2
Rhsim11G0101700 Rhododendron simsii HOM05D003412 ORTHO05D003962 4.6e-45 186.0 192 52.6
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 1.7e-44 184.1 328 39.6
Mapoly0116s0017 Marchantia polymorpha HOM05D003412 ORTHO05D003962 5.1e-44 182.6 325 37.2
AL1G19990 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 6.6e-44 182.2 332 38.3
AT1G09470 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 6.6e-44 182.2 332 39.2
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 1.9e-43 180.6 329 38.6
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 1.9e-43 180.6 235 46.8
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.1e-42 177.2 329 39.2
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 2.8e-42 176.8 336 37.8
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 8.1e-42 175.3 329 38.3
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 1.2e-40 171.4 329 38.6
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 3.4e-40 169.9 336 37.8
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 1.1e-38 164.9 328 37.5
SEGI_23842 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 1.6e-37 161.0 100 92.0
unitig_26.g8997 Utricularia gibba HOM05D003412 ORTHO05D003962 2.5e-22 110.5 239 34.3
Os01g0292700 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 4.6e-21 106.3 336 32.1
Zm00001eb129850 Zea mays HOM05D003412 ORTHO05D003962 3.0e-20 103.6 333 29.1
AT1G09483 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 6.7e-20 102.4 106 55.7
Zm00001eb075980 Zea mays HOM05D003412 ORTHO05D003962 4.6e-13 79.7 142 38.7
Dinv30941 Davidia involucrata HOM05D003412 ORTHO05D003962 8.7e-12 75.5 83 54.2
arahy.Tifrunner.gnm1.ann1.7ZMX5M Arachis hypogaea HOM05D003412 ORTHO05D003962 1.2e-08 65.1 80 48.8
arahy.Tifrunner.gnm1.ann1.US2PL9 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.8e-07 60.1 74 48.6


User provided reference genes

Program Settings