Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 2.5e-47 191.8 101 100.0
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.4e-37 158.7 101 79.2
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 2.2e-35 152.1 101 77.2
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 2.2e-35 152.1 101 77.2
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 2.2e-35 152.1 101 77.2
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.8e-35 151.4 101 76.2
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.8e-35 151.4 101 76.2
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 8.4e-35 150.2 101 75.2
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-34 149.8 101 75.2
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-34 148.3 101 75.2
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-34 148.3 101 75.2
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-34 148.3 101 75.2
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-34 148.3 101 75.2
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 4.2e-34 147.9 101 74.3
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 7.2e-34 147.1 101 74.3
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 7.2e-34 147.1 101 74.3
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 7.2e-34 147.1 101 74.3
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 7.2e-34 147.1 101 74.3
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 7.2e-34 147.1 101 73.3
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 1.2e-33 146.4 101 74.3
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.6e-33 146.0 101 74.3
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 2.7e-33 145.2 101 74.3
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 4.6e-33 144.4 101 74.3
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 4.6e-33 144.4 101 74.3
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 4.6e-33 144.4 101 74.3
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 4.6e-33 144.4 101 74.3
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.1e-33 144.1 101 73.3
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 7.9e-33 143.7 101 72.3
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 7.9e-33 143.7 101 72.3
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 7.9e-33 143.7 101 73.3
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.0e-32 141.7 101 72.3
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 3.9e-32 141.4 101 72.3
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-32 141.0 99 74.7
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-32 141.0 99 74.7
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-32 141.0 99 74.7
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.7e-32 140.6 101 71.3
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 1.1e-31 139.8 101 71.3
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 3.3e-31 138.3 101 72.3
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 7.4e-31 137.1 97 73.2
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 9.7e-31 136.7 99 70.7
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 4.8e-30 134.4 101 70.3
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 1.4e-29 132.9 101 68.3
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.8e-29 132.5 101 68.3
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 4.1e-29 131.3 101 69.3
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 6.9e-29 130.6 94 72.3
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 9.0e-29 130.2 101 70.3
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.4e-28 128.3 101 66.3
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 3.4e-28 128.3 86 77.9
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 4.5e-28 127.9 98 69.4
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.5e-28 127.9 101 65.3
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 1.7e-27 125.9 88 71.6
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.7e-27 125.9 100 68.0
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 3.8e-27 124.8 86 76.7
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 5.0e-27 124.4 99 67.7
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 7.2e-26 120.6 99 64.6
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 1.6e-25 119.4 101 64.4
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 1.1e-23 113.2 94 63.8
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 4.3e-23 111.3 93 64.5
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 7.4e-23 110.5 75 73.3
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 9.7e-23 110.2 99 59.6
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 9.7e-23 110.2 95 63.2
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 1.3e-22 109.8 70 75.7
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 1.7e-22 109.4 76 78.9
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 4.8e-22 107.8 79 73.4
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 7.7e-20 100.5 56 82.1
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 1.6e-17 92.8 97 55.7
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.1e-17 90.9 72 69.4
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 1.1e-15 86.7 57 73.7
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 8.2e-14 80.5 63 71.4
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 5.3e-13 77.8 48 72.9
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 7.0e-13 77.4 62 71.0
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 9.1e-13 77.0 91 52.7
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 2.0e-12 75.9 57 71.9
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 4.5e-12 74.7 48 72.9
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.0e-08 63.5 90 43.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.4e-08 63.2 90 43.3
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 5.2e-08 61.2 94 41.5
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 6.7e-08 60.8 91 44.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 8.8e-08 60.5 62 46.8
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.1e-07 60.1 93 40.9
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.1e-07 60.1 93 40.9
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 1.5e-07 59.7 90 42.2
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.0e-07 59.3 94 40.4
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 2.0e-07 59.3 94 40.4
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 2.0e-07 59.3 94 40.4
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.6e-07 58.9 90 41.1
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.6e-07 58.9 51 64.7
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 3.3e-07 58.5 93 41.9
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 3.3e-07 58.5 87 42.5
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.3e-07 58.5 93 43.0
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.3e-07 58.5 93 44.1
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 4.4e-07 58.2 51 64.7
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 5.7e-07 57.8 95 38.9
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 5.7e-07 57.8 95 38.9
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 5.7e-07 57.8 89 44.9
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 5.7e-07 57.8 33 72.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 7.5e-07 57.4 94 40.4
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 9.7e-07 57.0 94 38.3
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 9.7e-07 57.0 94 38.3
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 1.7e-06 56.2 102 35.3
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 94 39.4
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 2.2e-06 55.8 103 37.9
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 2.2e-06 55.8 93 39.8
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 2.2e-06 55.8 94 38.3
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 2.8e-06 55.5 56 50.0
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 2.8e-06 55.5 88 42.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 40.0
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 2.8e-06 55.5 95 41.1
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 3.7e-06 55.1 90 42.2
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.7e-06 55.1 93 35.5
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.7e-06 55.1 102 37.3
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.7e-06 55.1 102 37.3
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 3.7e-06 55.1 56 48.2
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 4.8e-06 54.7 93 35.5
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 4.8e-06 54.7 93 38.7
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 4.8e-06 54.7 93 35.5
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 6.3e-06 54.3 90 41.1
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 6.3e-06 54.3 90 41.1
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 6.3e-06 54.3 96 41.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 40.0
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 40.0
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 40.0
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 6.3e-06 54.3 102 37.3
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 41.1
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 8.2e-06 53.9 92 37.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 8.2e-06 53.9 103 37.9


User provided reference genes

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