Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 0.0e+00 1233.4 649 100.0
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.0e-197 694.1 648 56.3
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.6e-189 664.8 650 54.5
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.5e-188 663.7 648 56.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.2e-182 644.0 646 54.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.6e-181 638.3 647 54.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.4e-177 625.9 658 52.3
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 3.4e-177 625.9 651 53.5
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 6.4e-176 621.7 646 50.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 7.0e-175 618.2 648 51.4
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.7e-174 616.3 617 54.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.7e-173 613.6 661 50.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.1e-172 610.9 656 50.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.9e-172 610.1 637 52.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.3e-172 609.0 662 50.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.6e-171 607.1 649 51.6
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.1e-167 592.4 660 49.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.7e-166 589.7 668 48.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.2e-163 580.9 649 48.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 4.7e-163 578.9 647 48.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.6e-161 571.6 656 48.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 3.7e-160 569.3 661 46.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 4.9e-160 568.9 651 47.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.1e-159 567.8 644 47.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 7.1e-159 565.1 651 46.7
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 7.1e-159 565.1 663 46.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.6e-158 563.9 652 47.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.1e-158 563.5 652 47.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.6e-158 562.4 646 47.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 6.0e-158 562.0 636 47.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-157 560.8 636 47.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-157 560.8 636 48.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.7e-157 560.5 663 47.5
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.0e-157 559.7 640 48.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 6.6e-157 558.5 663 47.5
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.6e-157 558.1 640 47.8
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 8.6e-157 558.1 667 47.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.1e-156 557.8 655 47.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.5e-156 556.6 661 47.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.5e-156 556.6 668 46.9
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 3.3e-156 556.2 648 47.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.3e-156 555.8 658 47.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.3e-156 555.8 658 47.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.6e-156 554.7 633 47.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 9.6e-156 554.7 650 47.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.2e-155 554.3 654 46.9
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.2e-155 552.0 659 46.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 8.1e-155 551.6 660 46.8
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.4e-154 550.8 662 47.0
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-154 550.4 650 46.5
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.4e-154 550.1 666 45.6
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-154 549.3 650 46.3
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.2e-154 548.9 649 47.3
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 6.8e-154 548.5 640 47.2
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.8e-154 548.5 640 47.8
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 8.9e-154 548.1 672 46.0
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.2e-153 547.7 656 47.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.2e-153 547.7 697 45.5
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-153 547.4 633 47.7
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.4e-153 546.2 657 46.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.4e-153 545.8 538 52.6
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.3e-152 544.3 661 44.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.9e-152 543.1 650 45.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.9e-152 543.1 654 46.3
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.8e-152 542.7 644 46.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 6.4e-152 542.0 656 45.1
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.1e-151 541.2 645 47.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.6e-150 537.3 653 45.6
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.1e-150 537.0 648 46.0
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.1e-150 537.0 657 46.3
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.5e-150 536.2 707 43.1
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 6.0e-150 535.4 645 46.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 7.8e-150 535.0 654 46.0
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.3e-149 533.5 647 45.7
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.3e-149 533.5 671 44.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.9e-149 532.7 658 45.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.7e-149 531.6 648 46.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.9e-148 530.4 700 43.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.6e-148 528.9 648 45.8
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.1e-147 526.9 661 44.9
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.8e-147 525.8 648 45.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 8.1e-147 525.0 648 45.8
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.4e-146 524.2 645 45.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.4e-146 523.5 645 46.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 4.0e-146 522.7 641 45.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 4.0e-146 522.7 641 45.6
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 4.0e-146 522.7 641 45.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 9.0e-146 521.5 621 46.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.0e-145 520.4 645 45.7
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.8e-145 518.8 644 44.9
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.9e-144 516.5 645 45.4
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 4.9e-144 515.8 646 44.9
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.4e-144 515.0 655 44.4
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.1e-143 514.6 655 42.7
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-143 513.5 630 45.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.4e-143 513.5 653 44.9
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-143 513.1 630 45.4
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.2e-143 512.7 658 43.9
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.0e-141 508.1 645 45.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.9e-141 506.1 586 47.3
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 5.1e-141 505.8 655 43.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.7e-141 505.0 673 42.9
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.4e-138 497.7 658 41.8
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.2e-135 486.5 652 41.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.0e-133 479.9 650 42.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.1e-132 478.0 546 48.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.5e-132 476.9 650 41.7
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 7.4e-132 475.3 567 46.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-126 456.4 584 45.0
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.6e-126 456.1 539 45.3
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.6e-126 456.1 565 46.5
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.9e-125 453.0 624 41.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.3e-120 438.0 529 44.8
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.0e-120 436.0 511 47.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 5.5e-119 432.6 604 43.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.7e-118 430.3 654 40.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.3e-109 400.6 405 52.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 3.1e-90 337.0 397 48.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 8.8e-85 318.9 431 43.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.2e-84 318.5 428 43.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 8.5e-80 302.4 418 42.3
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-61 241.5 240 52.9
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.4e-58 231.1 377 39.0
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.1e-54 218.0 217 53.9
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.2e-52 212.2 249 48.2
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.0e-44 184.9 424 31.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.3e-40 172.2 251 41.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.9e-37 159.8 195 47.7
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.3e-35 155.6 376 31.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.3e-35 155.6 172 46.5
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-35 155.2 377 32.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 7.8e-33 146.4 627 25.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.1e-32 143.7 245 38.0
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-30 138.7 133 57.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.4e-29 134.8 261 37.2
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-27 127.9 267 35.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-25 122.5 213 36.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.6e-25 120.6 248 34.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-22 111.7 237 32.9
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.3e-21 107.1 119 51.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.4e-18 99.0 109 54.1
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-17 95.5 216 35.6
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-17 94.4 105 46.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-16 91.7 181 33.7
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.9e-16 90.9 132 44.7
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 5.1e-16 90.5 94 42.6
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-15 87.8 134 44.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.2e-14 83.2 182 37.4
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-12 79.0 88 51.1
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 5.8e-12 77.0 80 55.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.5e-10 70.5 67 58.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-09 68.9 64 46.9
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-09 68.6 69 55.1
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.8e-08 65.5 121 31.4
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 3.3e-07 61.2 74 45.9


User provided reference genes

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