Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 0.0e+00 1268.4 664 100.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 4.4e-31 140.6 287 37.6
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.4e-29 135.6 438 33.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.4e-29 134.8 307 38.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 9.2e-29 132.9 257 39.7
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 3.5e-28 131.0 449 31.4
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 5.9e-28 130.2 448 31.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 7.8e-28 129.8 425 32.7
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.7e-27 128.6 458 32.3
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 5.0e-27 127.1 378 33.6
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.5e-26 125.6 320 33.8
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.9e-26 125.2 371 34.5
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.9e-26 125.2 432 32.2
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.5e-26 124.8 404 31.2
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-26 124.8 372 31.5
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.3e-26 124.4 281 35.9
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.6e-26 123.6 359 30.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 7.3e-26 123.2 371 33.2
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.6e-25 122.1 434 30.2
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.6e-25 120.9 351 32.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.0e-25 119.8 423 30.0
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.1e-24 119.4 232 39.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-24 119.4 433 31.9
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.4e-24 119.0 205 40.0
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.4e-24 119.0 411 31.9
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-24 118.6 413 31.5
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.3e-24 118.2 435 31.3
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.3e-24 118.2 418 31.8
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 3.1e-24 117.9 340 32.9
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.1e-24 117.9 440 30.9
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.0e-24 117.5 229 39.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.0e-24 117.5 455 29.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.0e-24 117.5 456 29.8
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.2e-24 117.1 436 31.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 5.2e-24 117.1 432 30.3
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-23 115.9 431 32.0
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.5e-23 115.5 381 32.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.5e-23 115.5 435 30.3
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.5e-23 115.5 435 30.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.6e-23 114.8 316 35.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 5.8e-23 113.6 343 33.2
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 5.8e-23 113.6 292 33.9
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-22 112.5 388 33.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.7e-22 112.1 326 35.9
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.2e-22 111.7 429 30.1
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.2e-22 111.7 363 33.3
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 2.2e-22 111.7 326 33.1
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 2.9e-22 111.3 379 29.8
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.9e-22 111.3 447 29.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.7e-22 110.9 393 28.8
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.7e-22 110.9 416 29.3
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 6.4e-22 110.2 391 28.9
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 6.4e-22 110.2 381 31.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 6.4e-22 110.2 444 30.9
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 8.3e-22 109.8 253 34.4
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.3e-22 109.8 405 30.4
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 8.3e-22 109.8 225 36.4
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 8.3e-22 109.8 378 30.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.1e-21 109.4 407 30.0
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.1e-21 109.4 407 31.2
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.1e-21 109.4 430 29.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.1e-21 109.4 456 30.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.1e-21 109.4 314 32.2
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.4e-21 109.0 324 35.5
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.9e-21 108.6 421 30.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.1e-21 107.5 421 29.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 7.0e-21 106.7 415 31.6
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 9.2e-21 106.3 228 34.2
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.2e-20 105.9 444 29.7
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-20 105.9 442 28.7
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.0e-20 105.1 425 30.6
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.7e-20 104.8 231 36.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.7e-20 104.8 453 30.5
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 4.6e-20 104.0 375 28.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.6e-20 104.0 410 28.3
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.0e-20 103.6 428 28.3
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.0e-20 103.6 429 30.3
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 6.0e-20 103.6 288 34.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 7.8e-20 103.2 341 29.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.0e-19 102.8 478 28.2
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.3e-19 102.4 242 33.1
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 3.9e-19 100.9 314 33.8
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.6e-19 100.1 415 29.4
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 6.6e-19 100.1 434 29.0
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 8.6e-19 99.8 399 30.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.1e-18 99.4 322 31.1
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.5e-18 98.2 433 28.6
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 2.5e-18 98.2 427 29.5
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 3.3e-18 97.8 429 30.1
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 3.3e-18 97.8 324 32.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.3e-18 97.8 415 30.4
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 7.3e-18 96.7 448 28.8
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 7.3e-18 96.7 432 29.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.2e-17 95.9 307 31.3
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.2e-17 95.9 392 27.3
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.1e-17 95.1 432 28.9
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.1e-17 95.1 392 29.8
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.6e-17 94.4 263 33.5
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.6e-17 94.4 380 28.4
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.6e-17 94.4 464 28.0
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 3.6e-17 94.4 374 31.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.6e-17 94.4 432 28.7
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 3.6e-17 94.4 248 33.5
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.7e-17 94.0 220 34.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 8.1e-17 93.2 447 27.7
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.1e-16 91.3 246 30.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 3.1e-16 91.3 387 27.1
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.0e-16 90.9 255 34.9
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 5.2e-16 90.5 251 32.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 5.2e-16 90.5 352 29.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 6.8e-16 90.1 406 26.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 8.9e-16 89.7 368 30.4
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 1.2e-15 89.4 445 28.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.5e-15 89.0 440 28.4
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 2.0e-15 88.6 284 31.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.0e-15 88.6 313 28.8
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 2.6e-15 88.2 251 32.7
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.4e-15 87.8 352 25.6
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 4.4e-15 87.4 377 27.1
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.8e-15 87.0 368 28.3
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.2e-14 85.1 354 27.7
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.2e-14 85.1 367 30.0
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.9e-14 84.0 364 29.7
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 4.9e-14 84.0 261 33.3
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 8.3e-14 83.2 429 27.5
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 8.3e-14 83.2 251 31.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.1e-13 82.8 385 28.8
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.1e-13 82.8 361 26.9
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.4e-13 82.4 241 31.5
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.4e-13 82.4 246 32.5
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.9e-13 82.0 91 45.1
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.9e-13 82.0 376 27.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 2.4e-13 81.6 76 51.3
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 4.1e-13 80.9 213 32.4
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.1e-13 80.9 456 27.0
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 5.4e-13 80.5 445 27.4
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 5.4e-13 80.5 254 31.9
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 7.1e-13 80.1 286 30.4
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 7.1e-13 80.1 92 44.6
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 9.2e-13 79.7 405 28.4
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.2e-13 79.7 306 29.1
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.2e-12 79.3 98 41.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 2.1e-12 78.6 133 38.3
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 2.7e-12 78.2 406 27.6
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 3.5e-12 77.8 76 48.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 3.5e-12 77.8 76 50.0
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 6.0e-12 77.0 276 27.2
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.3e-11 75.9 263 28.1
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.7e-11 75.5 202 32.2
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.7e-11 75.5 365 26.6
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.3e-11 75.1 76 47.4
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 2.3e-11 75.1 255 29.8
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 3.0e-11 74.7 77 46.8
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.0e-11 74.7 74 51.4
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 3.9e-11 74.3 287 27.9
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.1e-11 73.9 425 26.1
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.1e-11 73.9 425 26.1
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 5.1e-11 73.9 194 30.4
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 6.6e-11 73.6 169 35.5
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 6.6e-11 73.6 169 35.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 6.6e-11 73.6 77 46.8
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 6.6e-11 73.6 254 29.5
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 8.6e-11 73.2 207 30.4
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.1e-10 72.8 415 27.5
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.1e-10 72.8 293 28.7
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.9e-10 72.0 246 28.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 5.6e-10 70.5 412 24.8
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.2e-09 69.3 243 30.0
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.6e-09 68.9 374 27.0
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 2.1e-09 68.6 72 52.8
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 6.2e-09 67.0 250 27.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 6.2e-09 67.0 243 30.0
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.1e-08 66.2 262 24.8
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.1e-08 66.2 240 26.7
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 1.4e-08 65.9 68 45.6
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.2e-07 62.8 138 34.8
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 5.8e-07 60.5 172 30.2
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 5.8e-07 60.5 52 48.1
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 7.6e-07 60.1 296 27.0
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.3e-06 59.3 200 29.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.3e-06 59.3 164 29.3
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 2.9e-06 58.2 59 49.2
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 4.9e-06 57.4 101 39.6
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 8.4e-06 56.6 243 25.9


User provided reference genes

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