Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.9e-28 127.5 67 100.0
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 7.6e-16 86.7 59 74.6
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.3e-15 85.9 59 74.6
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.3e-15 85.9 59 74.6
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.7e-15 85.5 59 78.0
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.9e-15 84.7 60 78.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.8e-15 84.3 59 71.2
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 4.9e-15 84.0 59 76.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 4.9e-15 84.0 59 71.2
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 6.4e-15 83.6 59 71.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 8.4e-15 83.2 59 71.2
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 8.4e-15 83.2 59 69.5
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 8.4e-15 83.2 59 69.5
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 8.4e-15 83.2 59 74.6
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 8.4e-15 83.2 59 74.6
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.1e-14 82.8 58 77.6
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.4e-14 82.4 59 74.6
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.9e-14 82.0 59 72.9
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.9e-14 82.0 60 71.7
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.9e-14 82.0 59 72.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.9e-14 82.0 59 72.9
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 2.4e-14 81.6 59 71.2
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 69.5
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 69.5
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.2e-14 81.3 50 80.0
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 71.2
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 3.2e-14 81.3 59 69.5
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 4.2e-14 80.9 50 80.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 4.2e-14 80.9 50 80.0
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 4.2e-14 80.9 50 80.0
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.2e-14 80.9 58 75.9
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 67.8
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 71.2
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 4.2e-14 80.9 59 69.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-14 80.9 59 69.5
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 5.5e-14 80.5 50 80.0
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 5.5e-14 80.5 50 80.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 5.5e-14 80.5 59 69.5
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 5.5e-14 80.5 59 69.5
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 5.5e-14 80.5 59 69.5
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 7.1e-14 80.1 59 71.2
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 7.1e-14 80.1 59 71.2
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 7.1e-14 80.1 59 71.2
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 7.1e-14 80.1 59 69.5
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 7.1e-14 80.1 59 72.9
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 9.3e-14 79.7 50 80.0
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 9.3e-14 79.7 59 69.5
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 9.3e-14 79.7 59 69.5
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 9.3e-14 79.7 57 75.4
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 9.3e-14 79.7 50 80.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.2e-13 79.3 50 78.0
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.2e-13 79.3 50 78.0
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.2e-13 79.3 59 69.5
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.2e-13 79.3 59 67.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.2e-13 79.3 59 71.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.2e-13 79.3 69 63.8
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 71.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 69.5
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 69.5
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 69.5
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 69.5
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 69.5
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.6e-13 79.0 59 67.8
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 2.1e-13 78.6 59 69.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-13 78.6 60 68.3
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.1e-13 78.6 59 67.8
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 2.1e-13 78.6 59 69.5
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 2.1e-13 78.6 50 80.0
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.1e-13 78.6 50 84.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.7e-13 78.2 59 66.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 3.5e-13 77.8 49 79.6
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.5e-13 77.8 59 69.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 6.0e-13 77.0 59 66.1
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 6.0e-13 77.0 59 67.8
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 7.9e-13 76.6 59 64.4
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.0e-12 76.3 59 71.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.0e-12 76.3 59 71.2
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.0e-12 76.3 59 67.8
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.0e-12 76.3 59 66.1
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.0e-12 76.3 51 78.4
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.3e-12 75.9 50 78.0
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.3e-12 75.9 59 64.4
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.3e-12 75.9 59 69.5
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 3.0e-12 74.7 59 62.7
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 6.7e-12 73.6 50 74.0
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-11 72.8 48 81.2
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 1.5e-11 72.4 45 86.7
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.5e-11 72.4 59 62.7
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.9e-11 72.0 59 62.7
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.5e-11 71.6 51 74.5
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 4.3e-11 70.9 59 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 5.6e-11 70.5 58 67.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.6e-11 70.5 53 71.7
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.6e-11 70.5 53 71.7
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 9.6e-11 69.7 50 66.0
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.7e-10 67.8 45 80.0
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.8e-09 65.5 62 64.5
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.9e-09 63.5 50 64.0
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.4e-08 61.2 52 61.5
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 5.8e-08 60.5 63 52.4
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.8e-07 57.8 47 66.0
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.5e-07 57.0 52 55.8
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 8.4e-07 56.6 37 81.1
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.9e-06 55.5 37 81.1
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 2.5e-06 55.1 46 67.4
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.5e-06 53.9 53 49.1
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 7.1e-06 53.5 27 85.2


User provided reference genes

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