Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.2e-142 508.4 263 100.0
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-49 199.9 275 45.5
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.0e-49 198.4 291 43.6
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.7e-48 196.4 293 44.4
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.7e-47 193.7 274 44.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 8.6e-47 191.4 283 45.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.5e-46 190.7 279 44.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-46 190.3 285 44.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-46 190.3 287 43.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-46 190.3 287 43.6
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-46 190.3 285 44.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.5e-46 189.9 279 43.0
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.5e-46 189.9 276 42.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.3e-46 189.5 272 44.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.3e-46 188.3 278 44.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 7.3e-46 188.3 288 42.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 9.5e-46 188.0 279 45.9
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.2e-45 187.6 275 44.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.1e-45 186.8 283 43.5
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.6e-45 186.0 284 41.2
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.7e-45 185.7 282 42.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 4.7e-45 185.7 275 42.9
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 6.2e-45 185.3 278 44.2
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-44 184.5 255 43.9
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-44 184.5 280 42.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-44 184.1 286 42.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.4e-44 184.1 257 43.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.8e-44 183.7 284 41.2
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.3e-44 183.3 269 43.9
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 4.0e-44 182.6 285 42.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 5.2e-44 182.2 278 43.5
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.2e-44 182.2 279 44.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 5.2e-44 182.2 297 42.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.9e-44 181.4 270 42.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-43 181.0 279 43.7
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.2e-43 181.0 275 42.9
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.5e-43 180.6 275 44.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.0e-43 180.3 286 41.6
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.6e-43 179.9 278 42.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.6e-43 179.9 276 45.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.6e-43 179.9 277 43.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 3.4e-43 179.5 278 40.6
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.4e-43 179.5 290 41.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.4e-43 179.5 288 40.6
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.4e-43 179.1 281 40.2
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 4.4e-43 179.1 281 40.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 4.4e-43 179.1 281 40.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 4.4e-43 179.1 286 42.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.4e-43 179.1 271 43.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 5.8e-43 178.7 298 43.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.8e-43 178.7 279 41.9
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.5e-43 178.3 275 40.4
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.7e-42 177.2 281 40.2
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.7e-42 177.2 289 40.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-42 176.8 281 39.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-42 176.8 276 40.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.2e-42 176.8 283 42.8
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.2e-42 176.8 279 42.3
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.9e-42 176.4 269 41.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.7e-42 176.0 278 41.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.7e-42 176.0 285 41.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.9e-42 175.6 273 41.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.4e-42 175.3 280 43.6
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 6.4e-42 175.3 276 42.8
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.3e-42 174.9 255 44.3
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 8.3e-42 174.9 291 40.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-41 174.5 280 43.2
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.4e-41 174.1 276 43.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.9e-41 173.7 288 40.3
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-41 173.3 281 39.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 5.4e-41 172.2 275 44.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 5.4e-41 172.2 291 39.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.1e-41 171.8 285 41.1
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.2e-40 171.0 200 49.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.1e-40 170.2 279 41.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.7e-40 169.9 285 40.0
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.7e-40 169.9 286 39.9
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.7e-40 169.9 218 45.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.6e-40 169.1 276 40.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 6.0e-40 168.7 292 38.7
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.0e-40 168.7 299 40.5
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.3e-39 166.8 280 39.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.3e-39 166.8 275 38.2
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.3e-39 166.8 243 45.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-39 166.4 256 40.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 8.6e-39 164.9 278 39.2
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.1e-38 164.5 278 41.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.5e-38 164.1 283 41.3
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-38 163.3 289 39.1
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.5e-38 163.3 283 38.9
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-38 163.3 281 39.5
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.5e-38 163.3 192 45.8
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 4.3e-38 162.5 291 39.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 4.3e-38 162.5 281 39.9
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 5.6e-38 162.2 283 38.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 7.3e-38 161.8 274 38.7
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 7.3e-38 161.8 257 40.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 7.3e-38 161.8 207 46.9
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-37 161.0 256 41.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.1e-37 160.2 287 38.0
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.1e-37 160.2 282 39.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.7e-37 159.1 201 46.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 8.1e-37 158.3 196 45.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.4e-36 157.5 279 37.3
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.4e-36 157.5 292 38.0
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.8e-36 157.1 280 39.6
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 3.1e-36 156.4 214 43.5
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 6.8e-36 155.2 289 38.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-35 154.5 289 37.4
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-35 153.3 289 37.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.8e-35 152.1 289 37.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-32 144.4 201 44.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.3e-31 140.2 178 46.1
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 7.3e-30 135.2 248 41.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 5.2e-28 129.0 275 36.7
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.7e-26 124.0 130 57.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.9e-26 123.2 261 37.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 8.4e-26 121.7 176 42.6
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-25 120.9 281 33.8
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 4.2e-25 119.4 253 37.5
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 5.4e-25 119.0 162 42.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.6e-24 117.5 162 46.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.0e-23 114.8 247 38.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.9e-22 110.5 282 33.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.9e-22 110.5 212 31.1
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.9e-22 110.5 212 31.1
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.3e-22 109.8 155 45.2
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.6e-22 109.0 145 42.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.4e-20 104.4 172 41.9
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.8e-20 104.0 181 41.4
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.4e-19 99.8 154 43.5
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.4e-19 99.8 91 51.6
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.3e-18 97.8 86 57.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.4e-18 95.5 137 45.3
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 8.4e-18 95.1 74 60.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 9.3e-17 91.7 72 62.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 9.3e-17 91.7 66 65.2
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.4e-09 67.0 66 54.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.9e-07 59.7 129 31.8


User provided reference genes

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