Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.6e-189 666.0 353 100.0
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 5.5e-81 305.4 249 66.3
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.7e-77 293.9 249 64.7
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.5e-75 287.3 249 60.6
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 5.0e-74 282.3 253 61.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 5.0e-74 282.3 249 61.8
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.4e-73 280.8 249 61.8
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.4e-73 278.1 250 61.2
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.6e-72 277.3 249 60.6
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.6e-72 276.2 250 60.4
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 4.7e-72 275.8 254 60.6
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 6.1e-72 275.4 252 61.5
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 7.9e-72 275.0 250 60.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.0e-71 274.6 248 60.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.0e-71 274.6 249 58.6
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.9e-71 272.7 249 59.8
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 3.9e-71 272.7 248 60.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 8.8e-71 271.6 249 61.0
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 8.8e-71 271.6 248 59.3
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.1e-70 271.2 252 60.3
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.1e-70 271.2 256 59.0
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.1e-70 271.2 250 60.8
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-70 271.2 249 59.8
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.0e-70 270.4 250 59.2
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 4.4e-70 269.2 250 59.6
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 5.7e-70 268.9 248 59.3
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.7e-69 266.2 250 59.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.3e-69 265.4 250 59.2
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 6.3e-69 265.4 221 65.6
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 8.2e-69 265.0 252 59.9
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.1e-68 264.6 250 58.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.4e-68 264.2 249 57.4
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.4e-68 263.5 254 56.7
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.4e-68 263.5 249 59.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 2.4e-68 263.5 257 59.1
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 3.1e-68 263.1 249 59.4
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 4.1e-68 262.7 250 56.4
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.3e-68 262.3 249 59.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 7.0e-68 261.9 249 59.8
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 7.0e-68 261.9 249 59.4
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 7.0e-68 261.9 251 59.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 7.0e-68 261.9 249 59.4
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 7.0e-68 261.9 250 58.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 7.0e-68 261.9 252 57.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.2e-67 261.2 247 58.3
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.2e-67 261.2 252 57.5
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.6e-67 260.0 210 67.1
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.0e-66 258.1 250 55.6
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.3e-66 257.7 267 55.4
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.3e-66 257.7 285 52.6
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-66 257.3 251 57.4
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 2.2e-66 256.9 249 57.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.5e-66 255.4 248 56.9
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 8.5e-66 255.0 251 56.2
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-65 254.6 253 57.7
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.9e-65 253.8 248 56.9
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-65 253.8 251 56.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.5e-65 253.4 285 53.7
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-65 253.4 248 56.9
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.5e-65 252.3 249 55.8
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 7.2e-65 251.9 252 55.2
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-64 251.1 248 56.9
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 2.7e-64 250.0 262 54.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.6e-64 249.6 248 56.5
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 6.1e-64 248.8 259 55.6
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 8.0e-64 248.4 249 55.4
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.0e-63 248.1 248 54.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-63 247.7 252 54.8
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 6.7e-63 245.4 252 54.0
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 8.8e-63 245.0 248 52.8
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 8.8e-63 245.0 265 54.7
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 8.8e-63 245.0 265 54.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 8.8e-63 245.0 252 54.4
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.2e-62 244.6 250 53.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.2e-62 244.6 251 53.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.5e-62 244.2 249 53.8
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.5e-62 244.2 248 56.0
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.0e-62 243.8 248 52.4
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.0e-62 243.8 249 55.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.6e-62 243.4 249 53.4
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 4.4e-62 242.7 249 53.8
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.7e-62 242.3 249 53.4
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.7e-62 242.3 249 53.4
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 5.7e-62 242.3 249 53.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 4.8e-61 239.2 251 52.6
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 3.1e-60 236.5 248 52.4
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 5.3e-60 235.7 250 52.0
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.0e-59 233.8 256 50.4
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.0e-59 233.8 256 53.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.5e-59 233.0 249 53.8
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 5.9e-59 232.3 248 52.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.2e-58 230.3 343 44.6
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.9e-58 229.9 264 49.2
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 8.5e-58 228.4 252 52.8
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 2.5e-57 226.9 254 50.4
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 4.2e-57 226.1 251 51.0
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 1.6e-56 224.2 257 50.2
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.1e-56 223.8 329 43.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.7e-56 223.4 341 42.5
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.8e-55 220.7 315 44.4
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.5e-54 217.6 224 55.4
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.0e-54 217.2 276 48.2
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.8e-52 210.7 243 46.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.1e-52 209.9 236 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.1e-52 209.5 243 46.1
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 5.4e-52 209.1 218 54.1
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.9e-50 203.4 233 51.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 8.6e-50 201.8 155 69.7
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 2.5e-49 200.3 274 44.9
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 5.5e-49 199.1 225 47.6
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 5.5e-49 199.1 256 47.3
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 8.0e-48 195.3 254 46.5
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 5.4e-44 182.6 140 67.1
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 9.2e-44 181.8 249 42.2
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.6e-43 181.0 174 56.9
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 3.5e-43 179.9 250 44.4
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.6e-42 175.6 231 45.0
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.5e-38 164.5 140 64.3
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 4.4e-38 162.9 214 50.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 9.8e-38 161.8 268 40.3
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 9.2e-36 155.2 234 40.2
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.9e-34 149.8 115 69.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.9e-34 149.8 161 52.2
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 8.6e-34 148.7 181 49.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 5.6e-25 119.4 82 79.3
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 5.2e-23 112.8 136 48.5
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 4.4e-22 109.8 172 40.7
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.4e-21 105.9 117 48.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.1e-20 102.4 76 67.1
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 9.2e-20 102.1 80 65.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 2.1e-19 100.9 77 67.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.9e-17 94.4 104 48.1
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 5.6e-17 92.8 104 47.1
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.1e-16 90.9 129 43.4
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.1e-15 87.0 104 45.2
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.1e-12 76.6 182 29.1
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.3e-10 71.6 69 52.2
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.7e-10 71.2 180 30.6
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 1.1e-07 62.0 195 29.7
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.4e-07 61.6 55 54.5
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.2e-06 58.5 58 50.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.2e-06 58.5 58 50.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.2e-06 58.5 58 50.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.2e-06 58.5 58 50.0


User provided reference genes

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