Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 8.8e-99 363.6 182 100.0
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.1e-53 213.8 112 99.1
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.8e-35 153.3 112 69.6
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.2e-34 150.6 113 69.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 2.0e-34 149.8 113 68.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 7.6e-34 147.9 113 69.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 9.9e-34 147.5 113 66.4
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.3e-33 147.1 113 66.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.7e-33 146.7 113 67.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.7e-33 146.7 113 65.5
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 2.2e-33 146.4 113 67.3
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.9e-33 146.0 113 64.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.9e-33 146.0 113 66.4
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.9e-33 145.2 113 65.5
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 4.9e-33 145.2 113 67.3
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 4.9e-33 145.2 112 66.1
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 4.9e-33 145.2 113 66.4
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 6.4e-33 144.8 113 66.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 6.4e-33 144.8 113 64.6
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 8.4e-33 144.4 113 64.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.4e-33 144.4 113 64.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.4e-32 143.7 113 66.4
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.4e-32 143.7 113 66.4
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 2.4e-32 142.9 113 66.4
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 3.2e-32 142.5 113 65.5
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.2e-32 142.5 113 63.7
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 5.4e-32 141.7 113 64.6
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 7.1e-32 141.4 113 65.5
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.1e-32 141.4 113 63.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.2e-31 140.6 113 65.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.2e-31 140.6 122 62.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.2e-31 140.6 112 59.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.6e-31 140.2 113 63.7
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.1e-31 139.8 113 65.5
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.1e-31 139.8 112 63.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 2.1e-31 139.8 113 64.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 2.1e-31 139.8 113 63.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.7e-31 139.4 113 62.8
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.5e-31 139.0 113 64.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 4.6e-31 138.7 112 62.5
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.8e-31 137.9 136 56.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 7.8e-31 137.9 113 61.1
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.0e-30 137.5 113 63.7
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.0e-30 137.5 113 63.7
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.3e-30 137.1 113 61.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.3e-30 137.1 113 64.6
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.7e-30 136.7 113 59.3
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 3.0e-30 136.0 113 62.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.9e-30 135.6 113 62.8
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.9e-30 135.6 113 62.8
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.1e-30 135.2 113 58.4
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 6.6e-30 134.8 113 61.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.6e-30 134.8 113 61.9
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 6.6e-30 134.8 112 55.4
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 6.6e-30 134.8 113 61.9
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 8.6e-30 134.4 113 61.9
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 8.6e-30 134.4 113 62.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 8.6e-30 134.4 113 61.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-29 134.0 112 59.8
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.5e-29 133.7 113 63.7
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.9e-29 133.3 113 61.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.3e-29 132.5 113 61.1
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.3e-29 132.5 113 60.2
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.3e-29 132.1 113 61.9
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 4.3e-29 132.1 113 59.3
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.6e-29 131.7 113 59.3
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 5.6e-29 131.7 113 62.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.6e-29 131.7 113 62.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.6e-29 131.7 113 60.2
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.6e-29 131.7 113 61.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 9.6e-29 131.0 113 56.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.6e-29 131.0 113 62.8
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 9.6e-29 131.0 126 59.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 1.2e-28 130.6 113 58.4
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.2e-28 130.6 113 60.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.2e-28 130.6 113 61.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.6e-28 130.2 113 61.1
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.6e-28 130.2 112 59.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.6e-28 130.2 113 59.3
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.6e-28 130.2 122 56.6
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.1e-28 129.8 113 58.4
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.6e-28 129.0 112 58.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 4.7e-28 128.6 116 56.9
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 8.1e-28 127.9 110 59.1
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 8.1e-28 127.9 112 56.2
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.8e-27 126.7 113 54.0
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.4e-27 126.3 115 56.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 57.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 57.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 57.5
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 57.5
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 57.5
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.0e-27 125.6 113 58.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 8.9e-27 124.4 101 59.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.0e-26 123.2 113 54.9
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-26 123.2 113 55.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 2.0e-26 123.2 113 55.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.0e-26 123.2 113 55.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.6e-26 122.9 113 55.8
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.6e-26 122.9 112 53.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 3.4e-26 122.5 113 54.9
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 3.4e-26 122.5 113 54.9
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.4e-26 122.5 100 60.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 4.4e-26 122.1 113 56.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 3.8e-25 119.0 113 54.9
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 3.8e-25 119.0 113 54.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.1e-24 117.5 113 50.4
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.4e-24 116.3 97 60.8
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 7.1e-24 114.8 113 53.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 9.3e-24 114.4 113 50.4
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.0e-22 110.9 113 50.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 7.3e-21 104.8 114 49.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 7.3e-21 104.8 112 47.3
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.3e-20 104.0 113 54.0
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.6e-20 102.4 114 48.2
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.2e-20 101.7 86 62.8
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-19 100.5 114 48.2
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.4e-19 100.5 114 48.2
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.4e-19 100.5 90 60.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.9e-19 98.2 114 47.4
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 3.4e-18 95.9 83 59.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.8e-17 92.4 114 47.4
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.3e-14 83.2 108 45.4
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 6.7e-14 81.6 93 51.6
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 7.4e-13 78.2 106 39.6
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.9e-09 66.2 73 53.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.4e-09 64.7 116 35.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.1e-08 61.6 63 55.6
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.1e-08 61.6 73 43.8
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.0e-06 57.8 110 37.3


User provided reference genes

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