Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00894 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 6.4e-57 223.8 107 100.0
Potri.011G107600 Populus trichocarpa HOM05D003130 ORTHO05D003547 4.3e-21 104.8 68 67.6
Potri.012G110400 Populus trichocarpa HOM05D003130 ORTHO05D003547 4.3e-21 104.8 68 67.6
Hma1.2p1_0050F.1_g029010 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 1.3e-20 103.2 68 69.1
MBI07_g00462_MAGBIO Magnolia biondii HOM05D003130 ORTHO05D003547 1.3e-20 103.2 67 71.6
Dinv15006 Davidia involucrata HOM05D003130 ORTHO05D003547 3.7e-20 101.7 68 67.6
Thhalv10018738m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 3.7e-20 101.7 67 67.2
Carub.0002s2554 Capsella rubella HOM05D003130 ORTHO05D003547 4.8e-20 101.3 67 65.7
PGR083G1989 Punica granatum HOM05D003130 ORTHO05D003547 4.8e-20 101.3 68 66.2
GSVIVG01014167001 Vitis vinifera HOM05D003130 ORTHO05D003547 4.8e-20 101.3 68 69.1
AL262U10012 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.2e-20 100.9 67 67.2
AL2G39070 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.2e-20 100.9 67 67.2
Lj1A826G63 Lonicera japonica HOM05D003130 ORTHO05D003547 6.2e-20 100.9 68 67.6
Aqoxy4G00223 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 8.1e-20 100.5 68 66.2
Potri.001G387100 Populus trichocarpa HOM05D003130 ORTHO05D003547 8.1e-20 100.5 68 66.2
Potri.003G026800 Populus trichocarpa HOM05D003130 ORTHO05D003547 8.1e-20 100.5 68 66.2
Sabra16G0254600 Salix brachista HOM05D003130 ORTHO05D003547 8.1e-20 100.5 68 66.2
CARHR072190 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.1e-19 100.1 67 65.7
Ciclev10020608m.g Citrus clementina HOM05D003130 ORTHO05D003547 1.1e-19 100.1 68 67.6
AT1G78660 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 1.4e-19 99.8 67 65.7
CSS0012460 Camellia sinensis var. sinensis HOM05D003130 ORTHO05D003547 1.4e-19 99.8 68 67.6
Manes.15G096800 Manihot esculenta HOM05D003130 ORTHO05D003547 1.4e-19 99.8 68 64.7
PSO782G2947 Papaver somniferum HOM05D003130 ORTHO05D003547 1.4e-19 99.8 62 72.6
Eucgr.F01296 Eucalyptus grandis HOM05D003130 ORTHO05D003547 1.8e-19 99.4 68 64.7
Eucgr.F01299 Eucalyptus grandis HOM05D003130 ORTHO05D003547 1.8e-19 99.4 68 64.7
vmacro11956 Vaccinium macrocarpon HOM05D003130 ORTHO05D003547 1.8e-19 99.4 68 66.2
Cfa019522 Carpinus fangiana HOM05D001036 ORTHO05D001852 2.4e-19 99.0 69 65.2
AUR62019606 Chenopodium quinoa HOM05D003130 ORTHO05D003547 2.4e-19 99.0 67 70.1
Sp5g33740 Schrenkiella parvula HOM05D003130 ORTHO05D003547 2.4e-19 99.0 67 65.7
SpUn0074_0020 Schrenkiella parvula HOM05D003130 ORTHO05D003547 2.4e-19 99.0 67 65.7
ATR0127G004 Amborella trichopoda HOM05D003130 ORTHO05D003547 3.1e-19 98.6 68 67.6
Cc05_g10920 Coffea canephora HOM05D003130 ORTHO05D003547 3.1e-19 98.6 68 66.2
Sc15g0000080 Simmondsia chinensis HOM05D003130 ORTHO05D003547 3.1e-19 98.6 68 67.6
AT1G78680 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 4.0e-19 98.2 67 65.7
Carub.0002s2551 Capsella rubella HOM05D003130 ORTHO05D003547 4.0e-19 98.2 67 65.7
Lsat_1_v5_gn_7_102180 Lactuca sativa HOM05D003130 ORTHO05D003547 4.0e-19 98.2 62 69.4
PSO170G0675 Papaver somniferum HOM05D003130 ORTHO05D003547 4.0e-19 98.2 62 71.0
AL262U10016 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 5.3e-19 97.8 67 65.7
Duzib213G0586 Durio zibethinus HOM05D003130 ORTHO05D003547 5.3e-19 97.8 68 66.2
Lsat_1_v5_gn_9_100580 Lactuca sativa HOM05D003130 ORTHO05D003547 5.3e-19 97.8 62 71.0
Nn3g21072 Nelumbo nucifera HOM05D003130 ORTHO05D003547 5.3e-19 97.8 68 67.6
THA.LOC104813997 Tarenaya hassleriana HOM05D003130 ORTHO05D003547 5.3e-19 97.8 67 64.2
Actinidia12592 Actinidia chinensis HOM05D003130 ORTHO05D003547 6.9e-19 97.4 68 66.2
AUR62037582 Chenopodium quinoa HOM05D003130 ORTHO05D003547 6.9e-19 97.4 67 68.7
BcaB05g25151 Brassica carinata HOM05D003130 ORTHO05D003547 9.0e-19 97.1 67 67.2
Haze_09254 Corylus avellana HOM05D003130 ORTHO05D003547 9.0e-19 97.1 68 66.2
HanXRQChr15g0495171 Helianthus annuus HOM05D003130 ORTHO05D003547 9.0e-19 97.1 62 69.4
Thecc.07G126300 Theobroma cacao HOM05D003130 ORTHO05D003547 9.0e-19 97.1 68 66.2
TAR627G0271 Trochodendron aralioides HOM05D003130 ORTHO05D003547 9.0e-19 97.1 68 64.7
BcaC03g15835 Brassica carinata HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 65.7
A02p22320 Brassica napus HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 65.7
C02p35860 Brassica napus HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 65.7
BolC2t09599H Brassica oleracea HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 65.7
BraA02t07236Z Brassica rapa HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 65.7
CARHR072210 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.2e-18 96.7 67 64.2
Cpa.g.sc77.51 Carica papaya HOM05D003130 ORTHO05D003547 1.2e-18 96.7 68 64.7
Gorai.002G051200 Gossypium raimondii HOM05D003130 ORTHO05D003547 1.2e-18 96.7 68 63.2
PSO423G0175 Papaver somniferum HOM05D003130 ORTHO05D003547 1.2e-18 96.7 62 72.6
C06p52560 Brassica napus HOM05D003130 ORTHO05D003547 1.5e-18 96.3 67 64.2
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 1.5e-18 96.3 67 64.2
BraA07t31900Z Brassica rapa HOM05D003130 ORTHO05D003547 1.5e-18 96.3 67 64.2
Hma1.2p1_1650F.1_g295670 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 1.5e-18 96.3 68 66.2
TWI39G0119 Tripterygium wilfordii HOM05D003130 ORTHO05D003547 1.5e-18 96.3 68 64.7
AL2G39084 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.0e-18 95.9 67 64.2
MSTRG.14241 Avicennia marina HOM05D003130 ORTHO05D003547 2.0e-18 95.9 62 69.4
Oeu036486.2 Olea europaea HOM05D003130 ORTHO05D003547 2.0e-18 95.9 62 67.7
PSO079G0057 Papaver somniferum HOM05D003130 ORTHO05D003547 2.0e-18 95.9 62 71.0
SalBow7G1363 Salvia bowleyana HOM05D003130 ORTHO05D003547 2.0e-18 95.9 80 57.5
SpUn0074_0050 Schrenkiella parvula HOM05D003130 ORTHO05D003547 2.0e-18 95.9 62 69.4
Thhalv10018776m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 2.6e-18 95.5 67 64.2
Aa31LG4G2310 Aethionema arabicum HOM05D003130 ORTHO05D003547 3.4e-18 95.1 67 62.7
A07p43930 Brassica napus HOM05D003130 ORTHO05D003547 3.4e-18 95.1 67 64.2
AT1G78670 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 4.5e-18 94.7 68 61.8
CiPaw.11G157200 Carya illinoinensis HOM05D003130 ORTHO05D003547 4.5e-18 94.7 68 63.2
Ca_03949_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 4.5e-18 94.7 67 61.2
Ciclev10020872m.g Citrus clementina HOM05D003130 ORTHO05D003547 4.5e-18 94.7 68 63.2
COL.COLO4_17512 Corchorus olitorius HOM05D003130 ORTHO05D003547 4.5e-18 94.7 68 64.7
Manes.03G099600 Manihot esculenta HOM05D003130 ORTHO05D003547 4.5e-18 94.7 65 67.7
BcaC08g47462 Brassica carinata HOM05D002832 ORTHO05D007530 5.8e-18 94.4 61 68.9
ECA236G4062 Erigeron canadensis HOM05D003130 ORTHO05D003547 5.8e-18 94.4 62 69.4
Prupe.4G159900 Prunus persica HOM05D003130 ORTHO05D003547 5.8e-18 94.4 68 63.2
RcHm_v2.0_Chr5g0030431 Rosa chinensis HOM05D003130 ORTHO05D003547 5.8e-18 94.4 68 63.2
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 7.6e-18 94.0 68 64.7
BcaB03g16026 Brassica carinata HOM05D003130 ORTHO05D003547 7.6e-18 94.0 67 64.2
DCAR_019604 Daucus carota HOM05D003130 ORTHO05D003547 7.6e-18 94.0 62 69.4
Migut.M00712 Erythranthe guttata HOM05D003130 ORTHO05D003547 7.6e-18 94.0 67 62.7
AL262U10014 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 9.9e-18 93.6 68 61.8
AL2G39082 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 9.9e-18 93.6 68 61.8
EL10Ac4g08383 Beta vulgaris HOM05D003130 ORTHO05D003547 9.9e-18 93.6 68 63.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.9e-18 93.6 100 49.0
Medtr2g075770 Medicago truncatula HOM05D003130 ORTHO05D003547 9.9e-18 93.6 67 62.7
SalBow7G1595 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.3e-17 93.2 76 59.2
CANSAT35G0714 Cannabis sativa HOM05D003130 ORTHO05D003547 1.7e-17 92.8 67 61.2
Ciclev10022857m.g Citrus clementina HOM05D003130 ORTHO05D003547 1.7e-17 92.8 67 62.7
FAN21G2254 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.7e-17 92.8 75 56.0
Nn6g34459 Nelumbo nucifera HOM05D003130 ORTHO05D003547 1.7e-17 92.8 68 64.7
Carub.0002s2553 Capsella rubella HOM05D003130 ORTHO05D003547 2.2e-17 92.4 61 67.2
CARHR072200 Cardamine hirsuta HOM05D003130 ORTHO05D003547 2.2e-17 92.4 68 60.3
Gohir.D01G041000 Gossypium hirsutum HOM05D003130 ORTHO05D003547 2.2e-17 92.4 68 60.3
MD03G1244700 Malus domestica HOM05D003130 ORTHO05D003547 2.2e-17 92.4 68 60.3
MD03G1244800 Malus domestica HOM05D003130 ORTHO05D003547 2.2e-17 92.4 68 60.3
Nitab4.5_0006663g0030 Nicotiana tabacum HOM05D003130 ORTHO05D003547 2.2e-17 92.4 62 69.4
Gohir.A01G051200 Gossypium hirsutum HOM05D003130 ORTHO05D003547 2.9e-17 92.0 68 60.3
arahy.Tifrunner.gnm1.ann1.F86IGW Arachis hypogaea HOM05D003130 ORTHO05D003547 3.8e-17 91.7 68 61.8
CiPaw.11G156700 Carya illinoinensis HOM05D003130 ORTHO05D003547 3.8e-17 91.7 68 61.8
RcHm_v2.0_Chr5g0030241 Rosa chinensis HOM05D003130 ORTHO05D003547 3.8e-17 91.7 62 66.1
unitig_0.g2277 Utricularia gibba HOM05D003130 ORTHO05D003547 3.8e-17 91.7 62 66.1
Medtr2g075760 Medicago truncatula HOM05D003130 ORTHO05D003547 4.9e-17 91.3 67 61.2
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 4.9e-17 91.3 62 67.7
ECA240G1349 Erigeron canadensis HOM05D003130 ORTHO05D003547 6.4e-17 90.9 62 64.5
Medtr2g075780 Medicago truncatula HOM05D003130 ORTHO05D003547 6.4e-17 90.9 67 59.7
Psat5g236280 Pisum sativum HOM05D003130 ORTHO05D003547 6.4e-17 90.9 67 64.2
SalBow7G4576 Salvia bowleyana HOM05D003130 ORTHO05D003547 6.4e-17 90.9 62 66.1
PGSC0003DMG400007066 Solanum tuberosum HOM05D003130 ORTHO05D003547 6.4e-17 90.9 68 61.8
PGSC0003DMG400035974 Solanum tuberosum HOM05D003130 ORTHO05D003547 6.4e-17 90.9 62 66.1
HPP92_006383 Vanilla planifolia HOM05D003130 ORTHO05D003547 6.4e-17 90.9 68 58.8
BraA07t31898Z Brassica rapa HOM05D003130 ORTHO05D003547 8.4e-17 90.5 68 60.3
Migut.H02016 Erythranthe guttata HOM05D003130 ORTHO05D003547 8.4e-17 90.5 65 64.6
Lj1g0011966 Lotus japonicus HOM05D003130 ORTHO05D003547 8.4e-17 90.5 68 58.8
Glyma.13G268000 Glycine max HOM05D003130 ORTHO05D003547 1.4e-16 89.7 67 59.7
Peaxi162Scf00692g00317 Petunia axillaris HOM05D003130 ORTHO05D003547 1.4e-16 89.7 62 64.5
RcHm_v2.0_Chr5g0030341 Rosa chinensis HOM05D003130 ORTHO05D003547 1.4e-16 89.7 68 60.3
SpUn0074_0040 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.4e-16 89.7 68 57.4
Thecc.07G126200 Theobroma cacao HOM05D003130 ORTHO05D003547 1.9e-16 89.4 62 69.4
Solyc07g062280.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 3.2e-16 88.6 62 66.1
Sopen07g030560 Solanum pennellii HOM05D003130 ORTHO05D003547 3.2e-16 88.6 62 66.1
CiPaw.11G156900 Carya illinoinensis HOM05D003130 ORTHO05D003547 4.2e-16 88.2 68 60.3
MELO3C025645.2 Cucumis melo HOM05D003130 ORTHO05D003547 5.5e-16 87.8 68 57.4
Lalb_Chr25g0285721 Lupinus albus HOM05D003130 ORTHO05D003547 7.1e-16 87.4 67 61.2
Nitab4.5_0000347g0200 Nicotiana tabacum HOM05D003130 ORTHO05D003547 7.1e-16 87.4 62 66.1
Phvul.005G080700 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 7.1e-16 87.4 67 59.7
Solyc07g062270.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 7.1e-16 87.4 68 60.3
CAN.G375.30 Capsicum annuum HOM05D003130 ORTHO05D003547 9.3e-16 87.0 62 64.5
Nitab4.5_0000788g0020 Nicotiana tabacum HOM05D003130 ORTHO05D003547 9.3e-16 87.0 67 61.2
TPR.G16064 Trifolium pratense HOM05D003130 ORTHO05D003547 9.3e-16 87.0 75 57.3
Lj3g0027506 Lotus japonicus HOM05D003130 ORTHO05D003547 2.1e-15 85.9 68 55.9
A07p43920 Brassica napus HOM05D003130 ORTHO05D003547 2.7e-15 85.5 68 57.4
Sopen07g030550 Solanum pennellii HOM05D003130 ORTHO05D003547 2.7e-15 85.5 68 58.8
Lalb_Chr20g0109171 Lupinus albus HOM05D003130 ORTHO05D003547 3.5e-15 85.1 68 55.9
CsaV3_4G033040 Cucumis sativus L. HOM05D003130 ORTHO05D003547 4.6e-15 84.7 68 55.9
Nitab4.5_0000383g0060 Nicotiana tabacum HOM05D003130 ORTHO05D003547 4.6e-15 84.7 64 57.8
VMungo1080G1321 Vigna mungo HOM05D003130 ORTHO05D003547 4.6e-15 84.7 67 56.7
Migut.H02014 Erythranthe guttata HOM05D003130 ORTHO05D003547 6.0e-15 84.3 79 54.4
RcHm_v2.0_Chr5g0030171 Rosa chinensis HOM05D003130 ORTHO05D003547 7.9e-15 84.0 70 57.1
CAN.G904.33 Capsicum annuum HOM05D003130 ORTHO05D003547 1.3e-14 83.2 59 59.3
PGSC0003DMG400021256 Solanum tuberosum HOM05D003130 ORTHO05D003547 1.8e-14 82.8 60 61.7
Gorai.002G051600 Gossypium raimondii HOM05D003130 ORTHO05D003547 3.9e-14 81.6 68 57.4
Solyc10g007410.4 Solanum lycopersicum HOM05D003130 ORTHO05D003547 3.9e-14 81.6 60 61.7
Sopen10g003240 Solanum pennellii HOM05D003130 ORTHO05D003547 3.9e-14 81.6 60 61.7
Phvul.005G080600 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 6.7e-14 80.9 65 60.0
Glyma.13G267851 Glycine max HOM05D003130 ORTHO05D003547 1.1e-13 80.1 65 60.0
BolC6t40273H Brassica oleracea HOM05D003130 ORTHO05D003547 1.5e-13 79.7 57 61.4
Migut.H02009 Erythranthe guttata HOM05D003130 ORTHO05D003547 1.5e-13 79.7 62 58.1
C06p52540 Brassica napus HOM05D003130 ORTHO05D003547 2.5e-13 79.0 56 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1069 Anthoceros agrestis HOM05D003130 ORTHO05D003547 5.6e-13 77.8 63 61.9
Ca_03950_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 5.6e-13 77.8 67 52.2
Rhsim06G0210400 Rhododendron simsii HOM05D003130 ORTHO05D003547 5.6e-13 77.8 108 40.7
RcHm_v2.0_Chr5g0030511 Rosa chinensis HOM05D003130 ORTHO05D003547 5.6e-13 77.8 55 65.5
CsaV3_4G033050 Cucumis sativus L. HOM05D003130 ORTHO05D003547 9.6e-13 77.0 67 47.8
Os05g0517500 Oryza sativa ssp. japonica HOM05D003130 ORTHO05D003547 1.3e-12 76.6 59 61.0
SEGI_10926 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 1.3e-12 76.6 64 56.2
Pp3c17_12060 Physcomitrium patens HOM05D003130 ORTHO05D003547 2.8e-12 75.5 63 57.1
SMO165G0138 Selaginella moellendorffii HOM05D003130 ORTHO05D003547 2.8e-12 75.5 62 59.7
VMungo1080G1395 Vigna mungo HOM05D003130 ORTHO05D003547 3.7e-12 75.1 63 57.1
Zm00001eb353180 Zea mays HOM05D003130 ORTHO05D003547 3.7e-12 75.1 59 61.0
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 4.8e-12 74.7 59 59.3
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 4.8e-12 74.7 59 59.3
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 1.1e-11 73.6 59 57.6
Pp3c26_1140 Physcomitrium patens HOM05D003130 ORTHO05D003547 1.4e-11 73.2 72 52.8
Actinidia07510 Actinidia chinensis HOM05D003130 ORTHO05D003547 2.2e-09 65.9 70 48.6
Mapoly0032s0037 Marchantia polymorpha HOM05D003130 ORTHO05D003547 2.5e-08 62.4 60 50.0
Zm00001eb199250 Zea mays HOM05D003130 ORTHO05D003547 4.6e-07 58.2 59 50.8
CBR_g19230 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-07 57.8 72 43.1
Cre07.g315050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 5.1e-06 54.7 65 40.0
Cre06.g275050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 6.7e-06 54.3 67 43.3
FvH4_3g18102 Fragaria vesca HOM05D003130 ORTHO05D003547 8.7e-06 53.9 37 56.8
QL08p022923 Quercus lobata HOM05D003130 ORTHO05D003547 8.7e-06 53.9 37 59.5


User provided reference genes

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