Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00816 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.0e-201 704.9 453 100.0
SEGI_39624 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 8.9e-100 368.2 338 81.1
SEGI_15437 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.2e-93 347.8 320 78.4
SEGI_17689 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 3.1e-84 316.6 333 74.8
SEGI_08433 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 7.0e-81 305.4 357 68.1
SEGI_01013 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 6.0e-72 275.8 388 49.2
SEGI_07074 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.8e-68 264.2 357 50.7
SEGI_21774 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 5.2e-68 262.7 338 48.2
SEGI_35541 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 7.6e-67 258.8 338 46.2
SEGI_29542 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 2.7e-64 250.4 337 53.4
SEGI_14515 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.7e-55 221.1 298 58.4
SEGI_15647 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 6.6e-55 219.2 336 40.8
SEGI_41151 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 8.1e-53 212.2 382 44.5
SEGI_12839 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 8.7e-47 192.2 323 39.9
SEGI_18603 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.8e-45 186.4 336 45.8
SEGI_27496 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 3.1e-44 183.7 338 50.9
SEGI_07700 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.0e-44 183.3 337 50.4
SEGI_29297 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.0e-44 183.3 337 50.4
SEGI_30629 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 9.9e-43 178.7 149 59.1
SEGI_40316 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 9.9e-43 178.7 331 54.7
SEGI_23645 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 7.1e-41 172.6 343 57.1
SEGI_04008 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.6e-40 169.9 320 49.4
SEGI_10653 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.6e-40 169.9 327 45.3
SEGI_26419 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.8e-39 167.9 333 39.3
SEGI_28494 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.1e-36 158.7 315 58.4
SEGI_37058 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 6.5e-34 149.4 116 62.1
SEGI_01788 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 3.9e-31 140.2 113 66.4
Lsat_1_v5_gn_4_10120 Lactuca sativa HOM05D004798 ORTHO05D005809 9.4e-25 119.0 162 39.5
SEGI_10870 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 3.6e-24 117.1 258 44.6
AL2G39690 Arabidopsis lyrata HOM05D004798 ORTHO05D005809 1.3e-21 108.6 167 36.5
ATR0796G246 Amborella trichopoda HOM05D004798 ORTHO05D005809 2.8e-21 107.5 162 38.3
THA.LOC104813610 Tarenaya hassleriana HOM05D004798 ORTHO05D005809 4.8e-21 106.7 162 35.2
BcaC08g47487 Brassica carinata HOM05D004798 ORTHO05D005809 1.1e-20 105.5 165 36.4
C06p53110 Brassica napus HOM05D004798 ORTHO05D005809 1.1e-20 105.5 165 36.4
BolC6t40328H Brassica oleracea HOM05D004798 ORTHO05D005809 1.1e-20 105.5 165 36.4
Carub.0002s2609 Capsella rubella HOM05D004798 ORTHO05D005809 1.1e-20 105.5 167 34.7
AT1G79220 Arabidopsis thaliana HOM05D004798 ORTHO05D005809 1.8e-20 104.8 162 34.0
A07p44340 Brassica napus HOM05D004798 ORTHO05D005809 3.1e-20 104.0 165 35.8
Nn7g35901 Nelumbo nucifera HOM05D004798 ORTHO05D005809 5.3e-20 103.2 162 35.2
Actinidia07389 Actinidia chinensis HOM05D004798 ORTHO05D005809 6.9e-20 102.8 162 34.0
BcaB02g08675 Brassica carinata HOM05D004798 ORTHO05D005809 6.9e-20 102.8 161 36.0
BraA07t31942Z Brassica rapa HOM05D004798 ORTHO05D005809 9.1e-20 102.4 161 36.0
ECA234G4198 Erigeron canadensis HOM05D007647 ORTHO05D009644 1.5e-19 101.7 162 36.4
Thhalv10019771m.g Eutrema salsugineum HOM05D004798 ORTHO05D005809 2.6e-19 100.9 165 33.3
CANSAT80G0679 Cannabis sativa HOM05D004798 ORTHO05D005809 4.5e-19 100.1 162 32.1
Cfa000971 Carpinus fangiana HOM05D004798 ORTHO05D005809 5.9e-19 99.8 164 32.9
Cfa000972 Carpinus fangiana HOM05D004798 ORTHO05D005809 5.9e-19 99.8 164 32.9
Duzib205G0692 Durio zibethinus HOM05D004798 ORTHO05D005809 5.9e-19 99.8 162 31.5
Sp5g34270 Schrenkiella parvula HOM05D004798 ORTHO05D005809 5.9e-19 99.8 133 36.1
COL.COLO4_32241 Corchorus olitorius HOM05D004798 ORTHO05D005809 7.7e-19 99.4 144 34.0
HanXRQChr05g0152291 Helianthus annuus HOM05D004798 ORTHO05D005809 1.7e-18 98.2 162 34.0
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 2.2e-18 97.8 207 32.4
TWI23G0839 Tripterygium wilfordii HOM05D004798 ORTHO05D005809 2.2e-18 97.8 158 34.2
Cpa.g.sc36.174 Carica papaya HOM05D004798 ORTHO05D005809 2.9e-18 97.4 162 31.5
Gohir.D01G034100 Gossypium hirsutum HOM05D004798 ORTHO05D005809 2.9e-18 97.4 163 33.1
Haze_05550 Corylus avellana HOM05D004798 ORTHO05D005809 6.5e-18 96.3 164 31.1
Thecc.06G226700 Theobroma cacao HOM05D004798 ORTHO05D005809 6.5e-18 96.3 163 31.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.5e-18 95.9 163 31.9
Gorai.002G042200 Gossypium raimondii HOM05D004798 ORTHO05D005809 8.5e-18 95.9 163 32.5
Eucgr.B03144 Eucalyptus grandis HOM05D004798 ORTHO05D005809 1.4e-17 95.1 163 32.5
Gohir.D07G024300 Gossypium hirsutum HOM05D004798 ORTHO05D005809 2.5e-17 94.4 163 33.1
arahy.Tifrunner.gnm1.ann1.1JZ67N Arachis hypogaea HOM05D004798 ORTHO05D005809 3.2e-17 94.0 144 31.2
EL10Ac5g10930 Beta vulgaris HOM05D004798 ORTHO05D005809 3.2e-17 94.0 165 32.1
CSS0004676 Camellia sinensis var. sinensis HOM05D004798 ORTHO05D005809 4.2e-17 93.6 162 32.1
CSS0022520 Camellia sinensis var. sinensis HOM05D004798 ORTHO05D005809 4.2e-17 93.6 162 32.1
Ciclev10007175m.g Citrus clementina HOM05D004798 ORTHO05D005809 4.2e-17 93.6 143 32.9
Potri.007G069100 Populus trichocarpa HOM05D004798 ORTHO05D005809 5.5e-17 93.2 158 33.5
TWI59G1404 Tripterygium wilfordii HOM05D004798 ORTHO05D005809 5.5e-17 93.2 158 32.3
Gohir.A07G022225 Gossypium hirsutum HOM05D004798 ORTHO05D005809 7.2e-17 92.8 163 32.5
Gorai.001G025500 Gossypium raimondii HOM05D004798 ORTHO05D005809 7.2e-17 92.8 163 33.1
Nitab4.5_0001189g0020 Nicotiana tabacum HOM05D004798 ORTHO05D005809 7.2e-17 92.8 199 28.1
QL04p063277 Quercus lobata HOM05D004798 ORTHO05D005809 7.2e-17 92.8 162 32.1
AUR62020832 Chenopodium quinoa HOM05D004798 ORTHO05D005809 9.4e-17 92.4 164 31.7
Manes.14G010600 Manihot esculenta HOM05D004798 ORTHO05D005809 9.4e-17 92.4 162 31.5
FAN16G3266 Fragaria x ananassa HOM05D004798 ORTHO05D005809 1.2e-16 92.0 318 23.3
Sabra07G0056500 Salix brachista HOM05D004798 ORTHO05D005809 1.2e-16 92.0 158 34.2
TAR624G0684 Trochodendron aralioides HOM05D004798 ORTHO05D005809 1.6e-16 91.7 162 32.1
MSTRG.21720 Avicennia marina HOM05D004798 ORTHO05D005809 2.1e-16 91.3 162 33.3
Oeu052570.1 Olea europaea HOM05D004798 ORTHO05D005809 2.1e-16 91.3 144 34.0
Nitab4.5_0000049g0040 Nicotiana tabacum HOM05D004798 ORTHO05D005809 2.7e-16 90.9 162 30.9
Oeu044747.1 Olea europaea HOM05D004798 ORTHO05D005809 2.7e-16 90.9 162 32.1
Cfa019269 Carpinus fangiana HOM05D004798 ORTHO05D005809 3.6e-16 90.5 162 30.9
CiPaw.11G062500 Carya illinoinensis HOM05D004798 ORTHO05D005809 3.6e-16 90.5 291 23.0
AUR62018586 Chenopodium quinoa HOM05D004798 ORTHO05D005809 3.6e-16 90.5 164 30.5
Cc06_g09150 Coffea canephora HOM05D004798 ORTHO05D005809 3.6e-16 90.5 158 32.3
Haze_07644 Corylus avellana HOM05D004798 ORTHO05D005809 3.6e-16 90.5 162 30.9
Dinv42483 Davidia involucrata HOM05D004798 ORTHO05D005809 3.6e-16 90.5 158 32.3
Medtr8g012210 Medicago truncatula HOM05D004798 ORTHO05D005809 3.6e-16 90.5 161 31.1
Rhsim06G0242400 Rhododendron simsii HOM05D004798 ORTHO05D005809 3.6e-16 90.5 162 30.9
FAN21G4068 Fragaria x ananassa HOM05D004798 ORTHO05D005809 4.7e-16 90.1 318 23.0
Lj2C15T15 Lonicera japonica HOM05D004798 ORTHO05D005809 4.7e-16 90.1 158 32.9
vmacro11698 Vaccinium macrocarpon HOM05D004798 ORTHO05D005809 4.7e-16 90.1 162 32.1
FvH4_3g15040 Fragaria vesca HOM05D004798 ORTHO05D005809 6.1e-16 89.7 318 23.0
Rhsim05G0210400 Rhododendron simsii HOM05D004798 ORTHO05D005809 6.1e-16 89.7 162 30.9
RcHm_v2.0_Chr5g0024801 Rosa chinensis HOM05D004798 ORTHO05D005809 7.9e-16 89.4 158 31.6
CiPaw.11G062300 Carya illinoinensis HOM05D004798 ORTHO05D005809 1.4e-15 88.6 162 31.5
MD10G1208300 Malus domestica HOM05D004798 ORTHO05D005809 1.4e-15 88.6 158 29.1
RcHm_v2.0_Chr5g0024811 Rosa chinensis HOM05D004798 ORTHO05D005809 1.4e-15 88.6 158 30.4
TPR.G16444 Trifolium pratense HOM05D004798 ORTHO05D005809 1.4e-15 88.6 161 32.9
Aqoxy3G00727_Aqoxy3G00728 Aquilegia oxysepala HOM05D004798 ORTHO05D005809 1.8e-15 88.2 159 32.7
Lj3g0011819 Lotus japonicus HOM05D004798 ORTHO05D005809 1.8e-15 88.2 143 30.8
Lalb_Chr07g0194461 Lupinus albus HOM05D004798 ORTHO05D005809 1.8e-15 88.2 139 29.5
GSVIVG01036787001 Vitis vinifera HOM05D004798 ORTHO05D005809 1.8e-15 88.2 144 34.0
Prupe.4G134600 Prunus persica HOM05D004798 ORTHO05D005809 2.3e-15 87.8 158 29.1
Phvul.010G025900 Phaseolus vulgaris HOM05D004798 ORTHO05D005809 3.0e-15 87.4 162 27.8
SalBow6G1027 Salvia bowleyana HOM05D004798 ORTHO05D005809 3.0e-15 87.4 140 31.4
Sed0007670 Sechium edule HOM05D004798 ORTHO05D005809 3.0e-15 87.4 162 27.2
BcaC08g47489 Brassica carinata HOM05D004798 ORTHO05D005809 6.7e-15 86.3 152 34.9
C06p53130 Brassica napus HOM05D004798 ORTHO05D005809 6.7e-15 86.3 152 34.9
BolC6t40329H Brassica oleracea HOM05D004798 ORTHO05D005809 6.7e-15 86.3 152 34.9
Sc09g0007570 Simmondsia chinensis HOM05D004798 ORTHO05D005809 6.7e-15 86.3 162 28.4
Psat4g205840 Pisum sativum HOM05D004798 ORTHO05D005809 8.8e-15 85.9 161 29.8
Prupe.4G134700 Prunus persica HOM05D004798 ORTHO05D005809 8.8e-15 85.9 158 29.1
PGR142G0128 Punica granatum HOM05D004798 ORTHO05D005809 8.8e-15 85.9 161 29.8
Solyc02g067960.3 Solanum lycopersicum HOM05D004798 ORTHO05D005809 1.1e-14 85.5 162 29.6
Migut.D00034 Erythranthe guttata HOM05D004798 ORTHO05D005809 1.5e-14 85.1 162 30.9
Sopen02g017090 Solanum pennellii HOM05D004798 ORTHO05D005809 1.5e-14 85.1 162 29.0
CAN.G1057.22 Capsicum annuum HOM05D004798 ORTHO05D005809 2.0e-14 84.7 162 29.0
Glyma.16G085500 Glycine max HOM05D004798 ORTHO05D005809 2.0e-14 84.7 162 28.4
Peaxi162Scf00535g00737 Petunia axillaris HOM05D004798 ORTHO05D005809 2.0e-14 84.7 162 28.4
unitig_85.g27191 Utricularia gibba HOM05D004798 ORTHO05D005809 2.6e-14 84.3 138 34.8
DCAR_013726 Daucus carota HOM05D004798 ORTHO05D005809 3.3e-14 84.0 162 29.6
Nitab4.5_0003318g0110 Nicotiana tabacum HOM05D000048 ORTHO05D005809 3.3e-14 84.0 162 27.8
MELO3C007519.2 Cucumis melo HOM05D004798 ORTHO05D005809 4.4e-14 83.6 149 30.2
Nitab4.5_0001804g0010 Nicotiana tabacum HOM05D004798 ORTHO05D005809 5.7e-14 83.2 162 27.8
FAN25G3737 Fragaria x ananassa HOM05D004798 ORTHO05D005809 7.4e-14 82.8 154 29.9
FvH4_3g15050 Fragaria vesca HOM05D004798 ORTHO05D005809 1.7e-13 81.6 153 29.4
FAN11G3190 Fragaria x ananassa HOM05D004798 ORTHO05D005809 1.7e-13 81.6 153 29.4
SEGI_28250 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 2.2e-13 81.3 85 55.3
SGA_v2.0_scaffold80G25698 Striga asiatica HOM05D004798 ORTHO05D005809 2.2e-13 81.3 197 28.4
MD10G1208400 Malus domestica HOM05D004798 ORTHO05D005809 6.3e-13 79.7 158 29.1
CDE04G0495 Ceratophyllum demersum HOM05D004798 ORTHO05D005809 1.8e-12 78.2 138 31.9
Gorai.002G041600 Gossypium raimondii HOM05D004798 ORTHO05D005809 2.4e-12 77.8 137 33.6
Gorai.002G041700 Gossypium raimondii HOM05D004798 ORTHO05D005809 2.4e-12 77.8 125 31.2
Thecc.07G180700 Theobroma cacao HOM05D004798 ORTHO05D005809 2.4e-12 77.8 130 31.5
CDE10G0756 Ceratophyllum demersum HOM05D000161 ORTHO05D000111 1.7e-10 71.6 160 28.8
Sabra01G0024600 Salix brachista HOM05D000161 ORTHO05D000111 5.0e-10 70.1 201 25.9
QL04p023231 Quercus lobata HOM05D000161 ORTHO05D000111 6.5e-10 69.7 135 31.1
Potri.001G035000 Populus trichocarpa HOM05D000161 ORTHO05D000111 1.1e-09 68.9 126 30.2
Os06g0225200 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D000111 5.5e-09 66.6 149 28.2
CDE10G1256 Ceratophyllum demersum HOM05D000161 ORTHO05D000111 9.4e-09 65.9 139 30.9
Aa31LG1G29200 Aethionema arabicum HOM05D000161 ORTHO05D000111 4.7e-08 63.5 165 26.7
MBI05_g32453_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 3.0e-07 60.8 157 27.4
Os06g0224650 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D000111 3.0e-07 60.8 131 28.2
ECA247G2667 Erigeron canadensis HOM05D000161 ORTHO05D000111 6.7e-07 59.7 124 28.2
Manes.01G005536 Manihot esculenta HOM05D000161 ORTHO05D000111 6.7e-07 59.7 139 29.5
Manes.01G005700 Manihot esculenta HOM05D000161 ORTHO05D000111 6.7e-07 59.7 139 30.2
ATR0564G526 Amborella trichopoda HOM05D000161 ORTHO05D000111 1.1e-06 58.9 108 29.6
ATR0564G512 Amborella trichopoda HOM05D000161 ORTHO05D000111 1.5e-06 58.5 108 29.6
CiPaw.03G136000 Carya illinoinensis HOM05D000161 ORTHO05D000111 2.0e-06 58.2 144 30.6
Migut.O00729 Erythranthe guttata HOM05D000161 ORTHO05D000111 2.0e-06 58.2 132 28.0
COL.COLO4_32250 Corchorus olitorius HOM05D004798 ORTHO05D005809 2.6e-06 57.8 78 32.1
Actinidia00031 Actinidia chinensis HOM05D000161 ORTHO05D000111 4.4e-06 57.0 115 31.3
Os06g0224900 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D000111 4.4e-06 57.0 126 28.6
TWI53G1972 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 4.4e-06 57.0 141 27.7
HPP92_009724 Vanilla planifolia HOM05D000161 ORTHO05D000111 4.4e-06 57.0 160 28.1
Nitab4.5_0000049g0020 Nicotiana tabacum HOM05D004798 ORTHO05D005809 5.7e-06 56.6 98 33.7
SEGI_28888 Sequoiadendron giganteum HOM05D000161 ORTHO05D000111 5.7e-06 56.6 138 27.5
COL.COLO4_15818 Corchorus olitorius HOM05D000161 ORTHO05D000111 7.4e-06 56.2 161 27.3
SEGI_38020 Sequoiadendron giganteum HOM05D000161 ORTHO05D000111 9.7e-06 55.8 141 25.5


User provided reference genes

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