Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.4e-268 928.3 483 100.0
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.2e-116 422.5 328 70.4
SEGI_15935 Sequoiadendron giganteum HOM05D059367 ORTHO05D384589 7.1e-63 245.7 173 72.3
SEGI_29674 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 3.4e-49 200.3 229 52.0
SEGI_20139 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 1.3e-48 198.4 123 83.7
SEGI_08915 Sequoiadendron giganteum HOM05D005231 ORTHO05D000043 2.3e-45 187.6 102 91.2
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.4e-34 151.8 141 65.2
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 1.5e-33 148.3 309 37.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.0e-32 145.6 164 54.3
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.7e-27 127.1 510 29.4
SEGI_31046 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 2.0e-25 121.3 145 53.1
SEGI_30310 Sequoiadendron giganteum HOM05D059367 ORTHO05D386732 1.3e-24 118.6 199 41.2
SEGI_00625 Sequoiadendron giganteum HOM05D000431 ORTHO05D000093 6.7e-21 106.3 65 69.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 1.5e-20 105.1 142 45.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 1.5e-20 105.1 131 46.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 1.9e-20 104.8 150 44.7
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 4.3e-20 103.6 161 42.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 4.3e-20 103.6 160 43.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 5.7e-20 103.2 161 39.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 7.4e-20 102.8 109 51.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 7.4e-20 102.8 130 47.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 7.4e-20 102.8 144 43.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 9.7e-20 102.4 132 45.5
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 9.7e-20 102.4 142 43.0
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.3e-19 102.1 131 44.3
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 1.3e-19 102.1 132 45.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 1.6e-19 101.7 110 49.1
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.2e-19 101.3 82 64.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.2e-19 101.3 82 64.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 2.2e-19 101.3 159 42.8
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 2.2e-19 101.3 131 44.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 2.8e-19 100.9 160 41.2
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 3.7e-19 100.5 109 51.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 3.7e-19 100.5 132 45.5
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 3.7e-19 100.5 132 45.5
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 4.8e-19 100.1 131 44.3
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 4.8e-19 100.1 110 50.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 4.8e-19 100.1 110 50.9
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 6.3e-19 99.8 110 50.9
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 6.3e-19 99.8 159 42.8
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 6.3e-19 99.8 109 51.4
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 6.3e-19 99.8 109 48.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 6.3e-19 99.8 147 41.5
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 8.2e-19 99.4 115 48.7
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 8.2e-19 99.4 132 44.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 8.2e-19 99.4 132 45.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 8.2e-19 99.4 132 45.5
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 8.2e-19 99.4 110 49.1
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 8.2e-19 99.4 109 51.4
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 8.2e-19 99.4 110 50.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 1.1e-18 99.0 110 49.1
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 1.1e-18 99.0 110 50.9
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 1.1e-18 99.0 109 51.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.1e-18 99.0 131 43.5
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 1.1e-18 99.0 110 50.9
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-18 99.0 108 50.9
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 1.1e-18 99.0 132 43.9
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 1.4e-18 98.6 109 49.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 1.4e-18 98.6 110 50.0
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 1.4e-18 98.6 95 55.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 1.4e-18 98.6 110 50.9
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.4e-18 98.6 132 44.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 1.4e-18 98.6 110 50.0
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 1.8e-18 98.2 109 49.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 1.8e-18 98.2 109 50.5
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 1.8e-18 98.2 82 62.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 2.4e-18 97.8 81 61.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 3.1e-18 97.4 110 48.2
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 3.1e-18 97.4 82 62.2
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 3.1e-18 97.4 110 50.9
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 4.1e-18 97.1 109 49.5
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 4.1e-18 97.1 109 49.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 4.1e-18 97.1 109 50.5
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 4.1e-18 97.1 130 45.4
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 5.3e-18 96.7 132 43.2
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 5.3e-18 96.7 132 43.2
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 5.3e-18 96.7 110 49.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 5.3e-18 96.7 132 43.2
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 5.3e-18 96.7 97 53.6
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 5.3e-18 96.7 97 53.6
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 5.3e-18 96.7 97 53.6
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 5.3e-18 96.7 97 53.6
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 5.3e-18 96.7 97 53.6
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 5.3e-18 96.7 82 59.8
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 5.3e-18 96.7 109 47.7
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 5.3e-18 96.7 82 59.8
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 5.3e-18 96.7 132 43.2
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 5.3e-18 96.7 82 59.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 6.9e-18 96.3 110 46.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 9.0e-18 95.9 97 52.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 1.2e-17 95.5 110 44.5
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 1.2e-17 95.5 109 49.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 1.2e-17 95.5 109 49.5
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 1.2e-17 95.5 109 47.7
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 1.2e-17 95.5 132 39.4
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 1.5e-17 95.1 132 43.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 1.5e-17 95.1 132 42.4
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 1.5e-17 95.1 74 63.5
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 1.5e-17 95.1 97 51.5
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 1.5e-17 95.1 74 63.5
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 2.0e-17 94.7 132 42.4
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.0e-17 94.7 110 48.2
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 2.6e-17 94.4 82 58.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 59.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 59.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 59.8
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 59.8
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 59.8
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 3.4e-17 94.0 82 58.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.5e-17 93.6 110 47.3
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 4.5e-17 93.6 75 62.7
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.7e-16 91.7 133 43.6
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 2.2e-16 91.3 83 51.8
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 2.9e-16 90.9 131 41.2
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 3.8e-16 90.5 81 53.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 5.0e-16 90.1 75 61.3
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 5.0e-16 90.1 75 61.3
SEGI_03740 Sequoiadendron giganteum HOM05D018713 ORTHO05D000093 5.0e-16 90.1 39 94.9
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 8.5e-16 89.4 110 44.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 8.5e-16 89.4 184 36.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 5.5e-15 86.7 170 34.7
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 2.1e-14 84.7 144 36.1
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 2.7e-14 84.3 81 49.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 6.1e-14 83.2 131 38.2
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.0e-13 82.4 80 50.0
SEGI_02733 Sequoiadendron giganteum HOM05D000250 ORTHO05D000979 1.4e-13 82.0 67 67.2
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 2.3e-13 81.3 73 53.4
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.5e-12 78.6 67 58.2
SEGI_24990 Sequoiadendron giganteum HOM05D000062 ORTHO05D014602 1.5e-12 78.6 103 51.5
SEGI_35276 Sequoiadendron giganteum HOM05D000062 ORTHO05D014602 1.5e-12 78.6 103 51.5
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 2.0e-12 78.2 190 33.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 9.7e-12 75.9 67 58.2
SEGI_40712 Sequoiadendron giganteum HOM05D000062 ORTHO05D014602 2.2e-11 74.7 67 64.2
SEGI_01772 Sequoiadendron giganteum HOM05D000062 ORTHO05D014602 1.8e-10 71.6 93 49.5
SEGI_35243 Sequoiadendron giganteum HOM05D000062 ORTHO05D014602 1.8e-10 71.6 93 49.5
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.1e-10 70.9 43 81.4
SEGI_39238 Sequoiadendron giganteum HOM05D008523 ORTHO05D010723 5.3e-10 70.1 42 81.0
SEGI_26194 Sequoiadendron giganteum HOM05D000426 ORTHO05D000979 2.6e-09 67.8 51 68.6
SEGI_27747 Sequoiadendron giganteum HOM05D000012 ORTHO05D000869 2.2e-08 64.7 29 82.8
SEGI_29916 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 3.2e-07 60.8 33 78.8
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 4.2e-07 60.5 35 88.6
SEGI_15939 Sequoiadendron giganteum HOM05D003219 ORTHO05D026562 4.2e-07 60.5 35 88.6
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 7.2e-07 59.7 33 78.8
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 9.4e-07 59.3 72 41.7
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.4e-07 59.3 58 55.2
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 1.6e-06 58.5 53 56.6


User provided reference genes

Program Settings