Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 4.8e-64 247.7 124 100.0
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.3e-24 114.4 65 84.6
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.8e-23 112.8 65 83.1
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 3.1e-23 112.1 65 83.1
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.1e-23 112.1 65 81.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.1e-23 111.7 65 84.6
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.1e-23 111.7 65 84.6
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.1e-23 111.7 65 84.6
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 5.3e-23 111.3 65 80.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.3e-23 111.3 65 78.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 9.1e-23 110.5 65 81.5
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.2e-22 110.2 65 78.5
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.2e-22 110.2 65 78.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.2e-22 110.2 65 81.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-22 109.8 64 79.7
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-22 109.8 64 79.7
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.6e-22 109.8 65 81.5
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.6e-22 109.8 65 83.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-22 109.8 65 80.0
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.6e-22 109.8 65 80.0
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.6e-22 109.8 75 69.3
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.0e-22 109.4 65 80.0
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.0e-22 109.4 65 80.0
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-22 109.4 65 80.0
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-22 109.4 65 80.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.0e-22 109.4 65 80.0
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.7e-22 109.0 65 81.5
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 2.7e-22 109.0 65 80.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.5e-22 108.6 65 80.0
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 3.5e-22 108.6 65 81.5
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 4.5e-22 108.2 65 80.0
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.5e-22 108.2 65 78.5
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.5e-22 108.2 65 78.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 5.9e-22 107.8 65 76.9
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 5.9e-22 107.8 65 76.9
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 5.9e-22 107.8 65 80.0
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 7.7e-22 107.5 65 78.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 7.7e-22 107.5 65 78.5
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.0e-21 107.1 65 78.5
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.0e-21 107.1 65 76.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.0e-21 107.1 65 76.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.0e-21 107.1 65 76.9
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.0e-21 107.1 65 78.5
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.0e-21 107.1 65 76.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-21 107.1 65 78.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.0e-21 107.1 65 75.4
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.3e-21 106.7 65 76.9
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.3e-21 106.7 65 75.4
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.3e-21 106.7 65 80.0
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.3e-21 106.7 65 75.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.3e-21 106.7 65 78.5
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 76.9
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 78.5
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 78.5
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 75.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 76.9
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 78.5
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 76.9
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 76.9
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.7e-21 106.3 65 76.9
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.2e-21 105.9 65 75.4
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-21 105.9 65 75.4
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.2e-21 105.9 65 78.5
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.9e-21 105.5 65 73.8
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.9e-21 105.5 65 76.9
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.8e-21 105.1 65 75.4
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 5.0e-21 104.8 65 75.4
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 5.0e-21 104.8 65 78.5
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 6.5e-21 104.4 65 76.9
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 6.5e-21 104.4 65 75.4
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 6.5e-21 104.4 65 75.4
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 6.5e-21 104.4 65 75.4
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.5e-21 104.4 65 75.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.5e-21 104.4 65 76.9
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 8.5e-21 104.0 65 75.4
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 76.9
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 76.9
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 75.4
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 78.5
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.1e-20 103.6 60 78.3
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.1e-20 103.6 102 53.9
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 76.9
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 76.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 76.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.1e-20 103.6 65 75.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.5e-20 103.2 65 76.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.5e-20 103.2 65 76.9
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.5e-20 103.2 65 73.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.9e-20 102.8 65 75.4
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.9e-20 102.8 65 75.4
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.9e-20 102.8 65 73.8
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.5e-20 102.4 65 73.8
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.5e-20 102.4 65 72.3
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.2e-20 102.1 65 73.8
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 3.2e-20 102.1 65 73.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.2e-20 102.1 65 73.8
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 3.2e-20 102.1 65 75.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.2e-20 102.1 65 73.8
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 4.2e-20 101.7 65 73.8
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 4.2e-20 101.7 65 73.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.2e-20 101.7 65 73.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 5.5e-20 101.3 65 73.8
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 7.2e-20 100.9 65 76.9
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 9.4e-20 100.5 65 73.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.2e-19 100.1 65 75.4
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.6e-19 99.8 65 72.3
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.6e-19 99.8 65 73.8
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.6e-19 99.8 65 70.8
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.6e-19 99.8 65 70.8
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 2.1e-19 99.4 65 72.3
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.7e-19 99.0 65 72.3
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-19 98.6 65 72.3
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 3.6e-19 98.6 65 72.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 4.7e-19 98.2 65 70.8
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 6.1e-19 97.8 65 69.2
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.0e-18 97.1 64 70.3
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 1.8e-18 96.3 90 58.9
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 5.2e-18 94.7 65 67.7
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 6.8e-18 94.4 65 70.8
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 6.8e-18 94.4 65 66.2
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.5e-17 93.2 65 69.2
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-17 93.2 65 72.3
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.5e-17 93.2 56 80.4
SEGI_00592 Sequoiadendron giganteum HOM05D000522 ORTHO05D019803 4.4e-17 91.7 58 72.4
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.3e-16 87.4 64 62.5
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 9.1e-15 84.0 64 60.9
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.8e-13 78.6 46 78.3
SEGI_35501 Sequoiadendron giganteum HOM05D001348 ORTHO05D008393 3.0e-10 68.9 47 68.1
SEGI_41218 Sequoiadendron giganteum HOM05D006462 ORTHO05D008067 7.5e-09 64.3 46 65.2
SEGI_24106 Sequoiadendron giganteum HOM05D002752 ORTHO05D000007 9.8e-09 63.9 43 69.8
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.3e-08 63.5 42 69.0
SEGI_14509 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 8.3e-08 60.8 46 58.7
SEGI_34109 Sequoiadendron giganteum HOM05D001613 ORTHO05D007209 1.6e-06 56.6 40 65.0


User provided reference genes

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