Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 8.2e-46 186.8 102 100.0
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 1.6e-09 66.2 51 56.9
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 2.8e-09 65.5 50 56.0
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 1.8e-08 62.8 51 51.0
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 1.8e-08 62.8 48 54.2
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 2.3e-08 62.4 51 56.9
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 3.1e-08 62.0 49 55.1
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 4.0e-08 61.6 48 54.2
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 4.0e-08 61.6 54 48.1
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 5.2e-08 61.2 51 52.9
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 6.8e-08 60.8 51 52.9
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 8.9e-08 60.5 48 54.2
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 8.9e-08 60.5 49 55.1
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 8.9e-08 60.5 49 55.1
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 8.9e-08 60.5 55 49.1
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 8.9e-08 60.5 48 54.2
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.2e-07 60.1 56 46.4
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.5e-07 59.7 49 53.1
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 2.0e-07 59.3 50 50.0
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 2.6e-07 58.9 55 47.3
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.6e-07 58.9 49 53.1
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.6e-07 58.9 49 53.1
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 2.6e-07 58.9 49 49.0
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.6e-07 58.9 52 50.0
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.6e-07 58.9 51 52.9
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 3.4e-07 58.5 55 50.9
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 4.4e-07 58.2 75 40.0
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 5.8e-07 57.8 55 50.9
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 5.8e-07 57.8 51 47.1
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 7.5e-07 57.4 54 46.3
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 7.5e-07 57.4 50 48.0
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 7.5e-07 57.4 55 47.3
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 7.5e-07 57.4 55 47.3
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 9.8e-07 57.0 49 46.9
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 9.8e-07 57.0 49 46.9
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 9.8e-07 57.0 49 46.9
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 9.8e-07 57.0 49 46.9
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 9.8e-07 57.0 66 45.5
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 9.8e-07 57.0 55 43.6
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 9.8e-07 57.0 49 49.0
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 9.8e-07 57.0 70 38.6
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 9.8e-07 57.0 50 48.0
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 1.3e-06 56.6 52 46.2
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 1.3e-06 56.6 46 52.2
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 1.3e-06 56.6 55 45.5
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 1.7e-06 56.2 76 42.1
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 1.7e-06 56.2 49 46.9
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 1.7e-06 56.2 47 51.1
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 2.2e-06 55.8 52 46.2
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 2.2e-06 55.8 49 46.9
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.9e-06 55.5 75 41.3
Pp3c10_22390 Physcomitrium patens HOM05D007598 ORTHO05D009632 2.9e-06 55.5 44 54.5
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 2.9e-06 55.5 55 45.5
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 2.9e-06 55.5 62 41.9
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 2.9e-06 55.5 71 39.4
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 3.7e-06 55.1 52 44.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 3.7e-06 55.1 54 44.4
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 3.7e-06 55.1 52 46.2
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 3.7e-06 55.1 48 47.9
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 4.9e-06 54.7 50 44.0
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 4.9e-06 54.7 48 45.8
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 4.9e-06 54.7 55 41.8
Os02g0715400 Oryza sativa ssp. japonica HOM05D027844 ORTHO05D037205 4.9e-06 54.7 53 49.1
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 4.9e-06 54.7 51 43.1
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 4.9e-06 54.7 48 47.9
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 4.9e-06 54.7 49 46.9
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 4.9e-06 54.7 64 43.8
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 6.4e-06 54.3 51 43.1
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 6.4e-06 54.3 48 45.8
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 6.4e-06 54.3 55 43.6
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 6.4e-06 54.3 55 43.6
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 6.4e-06 54.3 48 45.8
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 6.4e-06 54.3 49 46.9
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 8.3e-06 53.9 49 49.0
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 8.3e-06 53.9 49 49.0
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 8.3e-06 53.9 49 42.9
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 8.3e-06 53.9 54 42.6


User provided reference genes

Program Settings