Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00433 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 4.9e-80 301.2 167 100.0
SEGI_19056 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 1.7e-24 116.7 75 77.3
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 8.0e-14 81.3 73 57.5
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 3.0e-13 79.3 69 53.6
Nn5g30184 Nelumbo nucifera HOM05D003475 ORTHO05D004155 1.2e-12 77.4 90 46.7
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 2.6e-12 76.3 66 56.1
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 2.2e-11 73.2 51 66.7
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 2.2e-11 73.2 73 47.9
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 2.8e-11 72.8 67 52.2
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 2.8e-11 72.8 66 54.5
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 2.8e-11 72.8 63 57.1
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 3.7e-11 72.4 60 60.0
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 3.7e-11 72.4 82 47.6
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 3.7e-11 72.4 59 59.3
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 4.8e-11 72.0 50 62.0
CsaV3_4G034060 Cucumis sativus L. HOM05D003475 ORTHO05D004155 4.8e-11 72.0 60 58.3
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 4.8e-11 72.0 60 56.7
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 4.8e-11 72.0 48 68.8
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 6.3e-11 71.6 82 48.8
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 6.3e-11 71.6 50 66.0
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 6.3e-11 71.6 67 52.2
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 8.2e-11 71.2 60 58.3
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 8.2e-11 71.2 66 51.5
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 8.2e-11 71.2 47 68.1
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 8.2e-11 71.2 67 52.2
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 8.2e-11 71.2 60 58.3
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 1.1e-10 70.9 61 52.5
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 1.1e-10 70.9 46 67.4
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 1.1e-10 70.9 61 54.1
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 1.4e-10 70.5 60 56.7
arahy.Tifrunner.gnm1.ann1.Y23KDA Arachis hypogaea HOM05D003475 ORTHO05D004155 1.8e-10 70.1 50 64.0
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 1.8e-10 70.1 48 62.5
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 1.8e-10 70.1 84 46.4
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 2.4e-10 69.7 47 66.0
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 2.4e-10 69.7 76 46.1
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 3.1e-10 69.3 62 51.6
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 3.1e-10 69.3 73 50.7
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 3.1e-10 69.3 61 54.1
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 3.1e-10 69.3 73 47.9
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 3.1e-10 69.3 63 54.0
SHI08311 Sapria himalayana HOM05D003475 ORTHO05D004155 3.1e-10 69.3 74 50.0
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 3.1e-10 69.3 49 61.2
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 4.1e-10 68.9 66 56.1
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 4.1e-10 68.9 66 54.5
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 4.1e-10 68.9 66 54.5
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.1e-10 68.9 48 60.4
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 4.1e-10 68.9 45 68.9
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 4.1e-10 68.9 48 64.6
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 4.1e-10 68.9 64 54.7
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 4.1e-10 68.9 48 66.7
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 5.3e-10 68.6 48 64.6
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 5.3e-10 68.6 60 56.7
Dinv36000 Davidia involucrata HOM05D003475 ORTHO05D004155 5.3e-10 68.6 78 46.2
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 5.3e-10 68.6 79 46.8
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 5.3e-10 68.6 48 64.6
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 7.0e-10 68.2 50 64.0
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 7.0e-10 68.2 50 64.0
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 7.0e-10 68.2 70 48.6
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 7.0e-10 68.2 77 48.1
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 9.1e-10 67.8 60 58.3
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 9.1e-10 67.8 60 58.3
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 9.1e-10 67.8 60 58.3
MBI02_g21206_MAGBIO Magnolia biondii HOM05D003475 ORTHO05D004155 9.1e-10 67.8 48 62.5
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 1.2e-09 67.4 66 53.0
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.2e-09 67.4 76 46.1
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 1.2e-09 67.4 76 44.7
Nitab4.5_0004930g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.2e-09 67.4 73 47.9
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.6e-09 67.0 60 58.3
Pp3c1_10400 Physcomitrium patens HOM05D003475 ORTHO05D004155 1.6e-09 67.0 94 41.5
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 2.0e-09 66.6 62 51.6
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 2.0e-09 66.6 51 58.8
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 2.7e-09 66.2 84 42.9
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 2.7e-09 66.2 51 56.9
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 2.7e-09 66.2 51 56.9
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 3.5e-09 65.9 66 51.5
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 3.5e-09 65.9 48 60.4
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 3.5e-09 65.9 61 54.1
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 3.5e-09 65.9 48 58.3
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 4.5e-09 65.5 62 54.8
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 4.5e-09 65.5 53 54.7
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 4.5e-09 65.5 82 41.5
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 5.9e-09 65.1 48 62.5
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 7.7e-09 64.7 71 47.9
Nitab4.5_0003438g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 7.7e-09 64.7 61 50.8
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 7.7e-09 64.7 47 61.7
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 1.0e-08 64.3 61 50.8
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 1.0e-08 64.3 51 58.8
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 1.0e-08 64.3 65 50.8
HPP92_004236 Vanilla planifolia HOM05D003475 ORTHO05D004155 1.0e-08 64.3 48 58.3
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 1.0e-08 64.3 48 60.4
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 1.3e-08 63.9 66 51.5
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.3e-08 63.9 60 50.0
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 1.3e-08 63.9 48 60.4
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 1.7e-08 63.5 48 62.5
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.7e-08 63.5 49 59.2
vmacro21560 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 1.7e-08 63.5 65 53.8
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 2.2e-08 63.2 59 52.5
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 2.2e-08 63.2 48 58.3
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 2.2e-08 63.2 47 63.8
Psat4g195440 Pisum sativum HOM05D003475 ORTHO05D004155 2.2e-08 63.2 46 63.0
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 2.2e-08 63.2 48 62.5
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 2.9e-08 62.8 79 44.3
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 2.9e-08 62.8 58 51.7
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 2.9e-08 62.8 63 52.4
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 2.9e-08 62.8 63 52.4
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 3.8e-08 62.4 49 57.1
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.8e-08 62.4 49 57.1
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.8e-08 62.4 49 57.1
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 3.8e-08 62.4 46 56.5
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 5.0e-08 62.0 60 50.0
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 5.0e-08 62.0 47 63.8
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 5.0e-08 62.0 71 47.9
Prupe.1G441400 Prunus persica HOM05D003475 ORTHO05D004155 5.0e-08 62.0 47 59.6
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 6.5e-08 61.6 61 47.5
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 8.5e-08 61.2 48 58.3
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 8.5e-08 61.2 51 56.9
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 1.5e-07 60.5 49 53.1
DCAR_023532 Daucus carota HOM05D003475 ORTHO05D004155 1.5e-07 60.5 59 42.4
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 1.5e-07 60.5 46 56.5
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.9e-07 60.1 48 58.3
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 1.9e-07 60.1 48 58.3
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 1.9e-07 60.1 48 60.4
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 2.5e-07 59.7 49 55.1
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 3.2e-07 59.3 50 58.0
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 3.2e-07 59.3 52 50.0
FAN15G1851 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.2e-07 59.3 44 61.4
SalBow7G2818 Salvia bowleyana HOM05D003475 ORTHO05D004155 3.2e-07 59.3 67 47.8
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 4.2e-07 58.9 46 58.7
MD08G1107100 Malus domestica HOM05D003475 ORTHO05D004155 5.5e-07 58.5 50 56.0
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 5.5e-07 58.5 48 56.2
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 9.4e-07 57.8 51 56.9
vmacro21563 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 9.4e-07 57.8 53 54.7
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 9.4e-07 57.8 50 50.0
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 1.2e-06 57.4 51 51.0
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 1.6e-06 57.0 48 54.2
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 1.6e-06 57.0 45 60.0
SEGI_11952 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 2.7e-06 56.2 48 54.2


User provided reference genes

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