Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 0.0e+00 1277.3 668 100.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-236 823.5 653 73.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.1e-198 696.4 675 63.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.5e-192 674.9 720 59.6
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.1e-81 307.8 496 46.6
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.5e-18 99.0 103 46.6
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.3e-18 97.8 134 47.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.6e-18 97.1 148 40.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.6e-18 97.1 102 44.1
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.6e-18 97.1 102 44.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 7.3e-18 96.7 102 44.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.6e-17 95.5 192 33.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.6e-17 95.5 150 39.3
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-17 94.7 113 46.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.8e-17 94.7 136 42.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.6e-17 94.4 113 46.0
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.6e-17 94.4 136 41.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.2e-17 93.6 60 60.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 8.1e-17 93.2 60 58.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 8.1e-17 93.2 60 58.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.1e-17 93.2 161 40.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.1e-16 92.8 143 39.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.4e-16 92.4 167 38.3
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.4e-16 92.4 141 40.4
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-16 92.4 75 56.0
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.8e-16 92.0 143 38.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.4e-16 91.7 143 36.4
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.4e-16 91.7 185 36.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.1e-16 91.3 65 61.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 5.3e-16 90.5 74 55.4
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 5.3e-16 90.5 138 39.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 5.3e-16 90.5 138 39.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 6.9e-16 90.1 103 42.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.2e-15 89.4 132 40.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.2e-15 89.4 65 60.0
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.5e-15 89.0 143 35.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.5e-15 89.0 143 35.7
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.5e-15 89.0 102 45.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.4e-15 87.4 60 55.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.8e-15 87.0 143 36.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 5.8e-15 87.0 143 36.4
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 5.8e-15 87.0 154 35.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 7.6e-15 86.7 62 61.3
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.6e-15 86.7 157 40.1
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.6e-15 86.7 185 31.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 9.9e-15 86.3 130 36.2
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-14 85.9 166 35.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.7e-14 85.5 138 41.3
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.2e-14 85.1 137 40.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.2e-14 85.1 153 35.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.2e-14 85.1 166 35.5
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.9e-14 84.7 121 38.8
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.9e-14 84.7 148 38.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.9e-14 84.7 132 40.9
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.9e-14 84.7 157 39.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.9e-14 84.7 136 36.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-14 84.7 171 36.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.8e-14 84.3 157 35.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-14 84.3 146 33.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.9e-14 84.0 138 38.4
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 6.4e-14 83.6 139 36.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.4e-14 83.6 208 34.6
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 8.4e-14 83.2 149 38.3
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 8.4e-14 83.2 220 32.7
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 8.4e-14 83.2 119 38.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.4e-14 83.2 134 38.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 8.4e-14 83.2 159 37.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.1e-13 82.8 148 39.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.1e-13 82.8 240 33.3
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-13 82.8 64 56.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-13 82.8 64 56.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-13 82.8 64 56.2
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.4e-13 82.4 133 36.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-13 82.0 143 35.7
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.9e-13 82.0 157 38.9
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.9e-13 82.0 57 57.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.2e-13 81.3 108 39.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.2e-13 81.3 129 41.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.2e-13 81.3 129 41.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.2e-13 81.3 130 36.2
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.2e-13 81.3 60 55.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.2e-13 80.9 129 36.4
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.2e-13 80.9 135 34.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 5.4e-13 80.5 137 35.8
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 7.1e-13 80.1 122 36.9
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 7.1e-13 80.1 189 30.2
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 9.3e-13 79.7 129 38.0
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.3e-13 79.7 137 35.0
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-12 79.3 147 34.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.2e-12 79.3 163 35.6
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.6e-12 79.0 158 36.1
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.1e-12 78.6 48 60.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.7e-12 78.2 103 39.8
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.5e-12 77.8 137 35.0
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.5e-12 77.8 151 35.8
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.6e-12 77.4 205 33.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.6e-12 77.4 148 37.2
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 4.6e-12 77.4 136 37.5
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.0e-12 77.0 130 36.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 6.0e-12 77.0 151 35.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-11 76.3 134 35.1
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.3e-11 75.1 130 33.1
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.0e-11 74.7 134 34.3
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.0e-11 74.7 134 34.3
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.0e-11 74.7 134 34.3
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.0e-11 74.7 155 34.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 3.9e-11 74.3 170 32.9
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.9e-11 74.3 176 33.0
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 5.1e-11 73.9 126 34.9
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.1e-11 73.9 173 35.3
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.6e-11 73.6 200 31.0
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 6.6e-11 73.6 196 34.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.1e-10 72.8 174 32.8
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.1e-10 72.8 171 30.4
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-10 72.8 173 29.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.1e-10 72.8 116 40.5
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.1e-10 72.8 387 25.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-10 72.4 166 34.3
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-10 72.4 166 34.3
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.9e-10 72.0 168 34.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.5e-10 71.6 106 36.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.5e-10 71.6 171 32.7
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.3e-10 71.2 171 31.6
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.3e-10 71.2 362 26.0
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 5.6e-10 70.5 124 34.7
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 5.6e-10 70.5 218 32.1
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 7.3e-10 70.1 65 49.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 9.6e-10 69.7 61 47.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 9.6e-10 69.7 202 31.2
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 9.6e-10 69.7 218 29.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.3e-09 69.3 362 25.1
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.3e-09 69.3 158 31.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-09 68.6 177 30.5
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.1e-09 68.6 184 33.2
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.1e-09 68.6 194 29.4
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 4.8e-09 67.4 192 29.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.8e-09 67.4 374 26.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 8.1e-09 66.6 176 31.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 8.1e-09 66.6 371 26.7
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.4e-08 65.9 186 28.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-08 65.5 176 29.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.0e-08 64.3 271 28.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.3e-08 63.9 192 31.2
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 6.9e-08 63.5 171 31.0
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 6.9e-08 63.5 387 25.3
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.9e-08 63.5 366 26.2
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.5e-07 62.4 163 30.1
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.4e-07 61.2 379 25.1
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.4e-07 61.2 357 26.1
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.5e-07 60.8 208 26.4
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.6e-07 60.1 248 27.0
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.6e-07 60.1 147 30.6
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 7.6e-07 60.1 51 49.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 9.9e-07 59.7 62 46.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 6.4e-06 57.0 381 24.9
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 8.4e-06 56.6 381 25.7


User provided reference genes

Program Settings