Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 7.0e-229 797.0 409 100.0
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.4e-107 394.0 285 72.6
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.4e-107 394.0 279 76.0
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.3e-107 393.3 279 75.6
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 8.8e-107 391.3 280 75.7
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 2.0e-106 390.2 267 77.5
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 3.4e-106 389.4 286 73.1
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 3.4e-106 389.4 253 79.8
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 4.4e-106 389.0 279 74.2
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.4e-106 389.0 268 78.0
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 5.7e-106 388.7 277 74.4
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 5.7e-106 388.7 279 74.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.7e-106 388.7 279 74.2
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 9.7e-106 387.9 267 76.0
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 9.7e-106 387.9 279 74.6
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 9.7e-106 387.9 267 77.5
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 9.7e-106 387.9 267 76.0
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.3e-105 387.5 267 76.0
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.3e-105 387.5 279 73.8
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.3e-105 387.5 279 73.5
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.7e-105 387.1 267 77.9
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 2.2e-105 386.7 279 73.8
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.8e-105 386.3 267 75.7
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.8e-105 386.3 267 75.3
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 2.8e-105 386.3 279 74.2
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 2.8e-105 386.3 277 73.6
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 3.7e-105 386.0 267 75.7
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.8e-105 385.6 267 77.5
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 4.8e-105 385.6 267 75.7
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.3e-105 385.2 270 77.0
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 6.3e-105 385.2 267 75.3
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 6.3e-105 385.2 267 76.8
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 8.3e-105 384.8 279 74.2
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 1.1e-104 384.4 268 76.5
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.4e-104 384.0 279 73.8
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.8e-104 383.6 268 75.4
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 1.8e-104 383.6 267 76.0
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.8e-104 383.6 279 73.8
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.4e-104 383.3 267 75.3
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 2.4e-104 383.3 267 75.7
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 3.1e-104 382.9 267 76.0
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 3.1e-104 382.9 265 76.6
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 3.1e-104 382.9 267 76.4
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 3.1e-104 382.9 267 74.2
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.1e-104 382.9 268 76.5
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.1e-104 382.5 267 75.3
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 5.3e-104 382.1 267 76.0
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 7.0e-104 381.7 267 76.0
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 7.0e-104 381.7 267 76.4
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 9.1e-104 381.3 267 74.5
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 9.1e-104 381.3 267 74.9
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 9.1e-104 381.3 280 73.9
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 9.1e-104 381.3 279 72.4
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.2e-103 380.9 267 75.7
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.2e-103 380.9 259 76.1
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.6e-103 380.6 267 76.0
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 2.0e-103 380.2 267 75.7
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.0e-103 380.2 259 75.7
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.0e-103 380.2 279 73.5
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.7e-103 379.8 277 73.3
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 3.5e-103 379.4 267 74.9
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 3.5e-103 379.4 267 76.0
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 4.5e-103 379.0 279 72.4
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 4.5e-103 379.0 279 72.8
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 4.5e-103 379.0 279 72.0
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 5.9e-103 378.6 267 76.0
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 5.9e-103 378.6 279 72.4
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 5.9e-103 378.6 267 75.7
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-102 377.5 257 75.1
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.3e-102 377.5 267 74.2
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.7e-102 377.1 253 79.1
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.7e-102 377.1 279 72.4
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.9e-102 376.3 279 72.8
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 3.8e-102 375.9 267 74.2
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 3.8e-102 375.9 253 77.9
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.0e-102 375.6 279 72.8
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 6.5e-102 375.2 259 74.1
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 6.5e-102 375.2 285 70.2
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 8.5e-102 374.8 279 71.7
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 8.5e-102 374.8 279 71.7
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 8.5e-102 374.8 279 72.4
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 8.5e-102 374.8 279 72.4
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 8.5e-102 374.8 279 72.4
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 8.5e-102 374.8 267 75.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.1e-101 374.4 259 74.1
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-101 374.0 259 74.1
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.5e-101 374.0 267 74.9
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.9e-101 373.6 280 71.8
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.5e-101 373.2 279 72.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 3.2e-101 372.9 259 73.7
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 3.2e-101 372.9 259 73.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 4.2e-101 372.5 279 70.3
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.2e-101 372.5 279 72.0
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 4.2e-101 372.5 279 71.3
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 5.5e-101 372.1 267 74.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 5.5e-101 372.1 279 71.0
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 7.2e-101 371.7 267 74.5
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 9.4e-101 371.3 279 70.3
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 9.4e-101 371.3 279 70.3
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 2.1e-100 370.2 267 73.8
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 2.1e-100 370.2 279 71.3
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 2.7e-100 369.8 278 72.3
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 3.6e-100 369.4 267 73.4
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 3.6e-100 369.4 267 73.4
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 6.1e-100 368.6 279 72.0
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 6.1e-100 368.6 267 73.4
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 1.0e-99 367.9 279 71.3
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 4.0e-99 365.9 279 71.0
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 5.2e-99 365.5 267 72.3
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 6.8e-99 365.2 267 72.3
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.2e-98 364.4 279 71.3
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.2e-98 364.4 279 70.3
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 2.0e-98 363.6 267 72.7
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 7.5e-98 361.7 306 67.0
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 3.7e-97 359.4 279 68.1
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.1e-96 357.8 288 67.7
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.8e-96 357.1 279 69.2
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.8e-96 357.1 279 69.9
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 4.1e-96 355.9 259 71.8
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 4.1e-96 355.9 259 71.8
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.1e-96 355.9 259 71.8
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 4.1e-96 355.9 259 71.8
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 4.1e-96 355.9 279 69.5
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 5.9e-95 352.1 281 67.6
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.0e-94 351.3 285 67.4
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.1e-93 347.8 267 70.4
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.3e-93 346.3 331 59.5
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.3e-93 346.3 331 59.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 4.2e-93 345.9 279 66.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 4.2e-93 345.9 341 58.9
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.2e-92 344.4 245 72.2
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.0e-91 341.3 268 69.0
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 4.4e-90 335.9 212 79.7
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 8.3e-89 331.6 282 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 5.4e-88 328.9 290 59.0
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.0e-88 328.6 210 78.6
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.5e-87 325.9 206 81.1
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-85 321.2 279 61.3
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.8e-83 313.9 304 59.9
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 7.5e-82 308.5 220 72.3
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.7e-81 307.4 282 56.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.8e-75 287.3 260 56.9
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 2.0e-74 283.9 293 55.3
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.6e-71 274.2 292 51.4
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 2.5e-69 266.9 203 70.9
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.1e-67 261.5 261 58.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 8.9e-67 258.5 281 50.2
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.4e-64 250.4 264 51.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.2e-63 248.1 289 50.9
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 2.9e-57 226.9 174 71.3
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.4e-56 224.6 179 72.1
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.7e-54 217.6 173 69.4
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.8e-52 210.3 127 81.1
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 9.0e-51 205.3 186 65.1
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 2.1e-44 184.1 304 39.1
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 7.6e-42 175.6 131 75.6
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 3.0e-38 163.7 256 39.8
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.9e-38 163.3 160 60.6
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.8e-36 157.1 93 81.7
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.9e-35 152.5 232 40.5
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 7.6e-34 149.1 264 33.0
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.9e-33 147.1 175 49.7
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 1.1e-32 145.2 124 67.7
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.6e-26 124.0 251 37.8
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.5e-25 119.4 89 74.2
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 1.9e-21 107.8 65 73.8
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 4.3e-21 106.7 130 54.6
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 7.2e-16 89.4 52 76.9
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 1.6e-15 88.2 50 78.0
SEGI_28331 Sequoiadendron giganteum HOM05D003732 ORTHO05D004965 2.8e-12 77.4 46 78.3
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.8e-11 74.7 67 55.2
SEGI_29369 Sequoiadendron giganteum HOM05D038634 ORTHO05D002635 5.3e-11 73.2 63 57.1
SEGI_38226 Sequoiadendron giganteum HOM05D001468 ORTHO05D001404 9.1e-11 72.4 45 68.9
SEGI_34465 Sequoiadendron giganteum HOM05D038634 ORTHO05D002635 1.7e-09 68.2 63 54.0
SEGI_21792 Sequoiadendron giganteum HOM05D038634 ORTHO05D002217 3.8e-09 67.0 50 58.0
SEGI_24964 Sequoiadendron giganteum HOM05D000198 ORTHO05D000763 3.8e-09 67.0 63 55.6
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.1e-06 56.6 63 50.8


User provided reference genes

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