Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00249 Sequoiadendron giganteum HOM05D002472 ORTHO05D002827 1.0e-63 246.5 122 100.0
SGA_v2.0_scaffold196G40956 Striga asiatica HOM05D002472 ORTHO05D002827 3.5e-11 72.0 108 42.6
AT1G54520 Arabidopsis thaliana HOM05D002472 ORTHO05D002827 7.9e-11 70.9 108 43.5
AL1G64960 Arabidopsis lyrata HOM05D002472 ORTHO05D002827 3.0e-10 68.9 108 42.6
Carub.0002s0913 Capsella rubella HOM05D002472 ORTHO05D002827 3.0e-10 68.9 51 70.6
DCAR_006611 Daucus carota HOM05D002472 ORTHO05D002827 3.0e-10 68.9 109 42.2
Thecc.05G289000 Theobroma cacao HOM05D002472 ORTHO05D002827 3.0e-10 68.9 108 45.4
Migut.N01927 Erythranthe guttata HOM05D002472 ORTHO05D002827 5.1e-10 68.2 108 40.7
BcaC06g31949 Brassica carinata HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
BcaC09g50560 Brassica carinata HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
A01p18990 Brassica napus HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
C01p23920 Brassica napus HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
BraA01t01842Z Brassica rapa HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
SpUn0001_0400 Schrenkiella parvula HOM05D002472 ORTHO05D002827 6.7e-10 67.8 51 70.6
Aa31LG2G12270 Aethionema arabicum HOM05D002472 ORTHO05D002827 8.7e-10 67.4 51 68.6
Psat3g008240 Pisum sativum HOM05D002472 ORTHO05D002827 8.7e-10 67.4 108 41.7
TPR.G6975 Trifolium pratense HOM05D002472 ORTHO05D002827 8.7e-10 67.4 108 40.7
SalBow3G1967 Salvia bowleyana HOM05D002472 ORTHO05D002827 1.1e-09 67.0 108 42.6
VMungo0540G0191 Vigna mungo HOM05D002472 ORTHO05D002827 1.1e-09 67.0 108 40.7
CAN.G134.169 Capsicum annuum HOM05D002472 ORTHO05D002827 1.5e-09 66.6 108 40.7
Ca_09406_v3 Cicer arietinum L. HOM05D002472 ORTHO05D002827 1.5e-09 66.6 108 40.7
QL03p024106 Quercus lobata HOM05D002472 ORTHO05D002827 1.5e-09 66.6 57 61.4
Lsat_1_v5_gn_2_65020 Lactuca sativa HOM05D002472 ORTHO05D002827 1.9e-09 66.2 108 41.7
THA.LOC104821125 Tarenaya hassleriana HOM05D002472 ORTHO05D002827 1.9e-09 66.2 66 57.6
Gohir.A11G255600 Gossypium hirsutum HOM05D002472 ORTHO05D002827 2.5e-09 65.9 108 42.6
Gohir.D11G265400 Gossypium hirsutum HOM05D002472 ORTHO05D002827 2.5e-09 65.9 108 42.6
Lj1g0020326 Lotus japonicus HOM05D002472 ORTHO05D002827 2.5e-09 65.9 73 52.1
Medtr7g114660 Medicago truncatula HOM05D002472 ORTHO05D002827 2.5e-09 65.9 108 40.7
unitig_899.g15577 Utricularia gibba HOM05D002472 ORTHO05D002827 2.5e-09 65.9 107 43.0
vmacro05069 Vaccinium macrocarpon HOM05D002472 ORTHO05D002827 2.5e-09 65.9 109 43.1
Cc02_g31610 Coffea canephora HOM05D002472 ORTHO05D002827 3.3e-09 65.5 108 39.8
Gorai.007G285400 Gossypium raimondii HOM05D002472 ORTHO05D002827 3.3e-09 65.5 108 42.6
Os03g0695500 Oryza sativa ssp. japonica HOM05D002472 ORTHO05D002827 3.3e-09 65.5 67 56.7
Solyc01g097860.4 Solanum lycopersicum HOM05D002472 ORTHO05D002827 3.3e-09 65.5 108 40.7
BolC1t02342H Brassica oleracea HOM05D002472 ORTHO05D002827 4.3e-09 65.1 51 68.6
Cpa.g.sc264.12 Carica papaya HOM05D002472 ORTHO05D002827 4.3e-09 65.1 108 40.7
CDE10G0574 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 4.3e-09 65.1 108 40.7
Rhsim07G0175700 Rhododendron simsii HOM05D002472 ORTHO05D002827 4.3e-09 65.1 109 41.3
CANSAT54G0369 Cannabis sativa HOM05D002472 ORTHO05D002827 5.6e-09 64.7 108 39.8
CARHR055610 Cardamine hirsuta HOM05D002472 ORTHO05D002827 5.6e-09 64.7 51 64.7
Migut.N01932 Erythranthe guttata HOM05D002472 ORTHO05D002827 5.6e-09 64.7 108 39.8
Migut.O00598 Erythranthe guttata HOM05D002472 ORTHO05D002827 5.6e-09 64.7 108 39.8
Hma1.2p1_0332F.1_g127690 Hydrangea macrophylla HOM05D002472 ORTHO05D002827 5.6e-09 64.7 109 42.2
Lalb_Chr18g0045101 Lupinus albus HOM05D002472 ORTHO05D002827 5.6e-09 64.7 108 39.8
Potri.005G049500 Populus trichocarpa HOM05D002472 ORTHO05D002827 5.6e-09 64.7 108 43.5
arahy.Tifrunner.gnm1.ann1.E8NAY1 Arachis hypogaea HOM05D002472 ORTHO05D002827 7.4e-09 64.3 51 66.7
arahy.Tifrunner.gnm1.ann1.PGP8Y3 Arachis hypogaea HOM05D002472 ORTHO05D002827 7.4e-09 64.3 51 66.7
Duzib128G0462 Durio zibethinus HOM05D002472 ORTHO05D002827 7.4e-09 64.3 108 43.5
Eucgr.H04386 Eucalyptus grandis HOM05D002472 ORTHO05D002827 7.4e-09 64.3 108 39.8
Glyma.19G242800 Glycine max HOM05D002472 ORTHO05D002827 7.4e-09 64.3 108 39.8
PGSC0003DMG400022472 Solanum tuberosum HOM05D002472 ORTHO05D002827 7.4e-09 64.3 108 39.8
COL.COLO4_15276 Corchorus olitorius HOM05D002472 ORTHO05D002827 9.6e-09 63.9 108 40.7
Duzib177G0067 Durio zibethinus HOM05D002472 ORTHO05D002827 9.6e-09 63.9 51 68.6
Nitab4.5_0002361g0140 Nicotiana tabacum HOM05D002472 ORTHO05D002827 9.6e-09 63.9 108 38.9
Sopen01g041460 Solanum pennellii HOM05D002472 ORTHO05D002827 9.6e-09 63.9 108 39.8
Atru.chr2.723 Acer truncatum HOM05D002472 ORTHO05D002827 1.3e-08 63.5 67 50.7
COL.COLO4_15279 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.3e-08 63.5 120 34.2
COL.COLO4_15282 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.3e-08 63.5 110 39.1
ECA238G2290 Erigeron canadensis HOM05D002472 ORTHO05D001990 1.3e-08 63.5 108 39.8
Lalb_Chr15g0076891 Lupinus albus HOM05D002472 ORTHO05D002827 1.3e-08 63.5 51 66.7
Nitab4.5_0002840g0020 Nicotiana tabacum HOM05D002472 ORTHO05D002827 1.3e-08 63.5 108 40.7
Oeu021635.2 Olea europaea HOM05D002472 ORTHO05D002827 1.3e-08 63.5 107 39.3
QL03p024181 Quercus lobata HOM05D002472 ORTHO05D002827 1.3e-08 63.5 108 38.9
Sc20g0000230 Simmondsia chinensis HOM05D002472 ORTHO05D002827 1.3e-08 63.5 67 52.2
EL10Ac4g09186 Beta vulgaris HOM05D002472 ORTHO05D002827 1.6e-08 63.2 108 38.9
MD12G1236800 Malus domestica HOM05D002472 ORTHO05D002827 1.6e-08 63.2 108 38.0
PSO832G0752 Papaver somniferum HOM05D002472 ORTHO05D002827 1.6e-08 63.2 108 38.9
PGR004G0868 Punica granatum HOM05D002472 ORTHO05D002827 1.6e-08 63.2 108 38.9
Cfa006468 Carpinus fangiana HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 38.9
CiPaw.07G006900 Carya illinoinensis HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 38.9
AUR62004992 Chenopodium quinoa HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 38.0
Haze_04324 Corylus avellana HOM05D002472 ORTHO05D002827 2.1e-08 62.8 51 66.7
Nn4g26312 Nelumbo nucifera HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 38.0
PSO210G6821 Papaver somniferum HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 38.9
Peaxi162Scf00404g00027 Petunia axillaris HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 39.8
Phvul.006G099600 Phaseolus vulgaris HOM05D002472 ORTHO05D002827 2.1e-08 62.8 73 50.7
Sabra05G0044700 Salix brachista HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 41.7
Sabra15G0050500 Salix brachista HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 41.7
Sabra15G0074400 Salix brachista HOM05D002472 ORTHO05D002827 2.1e-08 62.8 108 41.7
Zm00001eb217000 Zea mays HOM05D002472 ORTHO05D002827 2.1e-08 62.8 51 64.7
ATR0737G105 Amborella trichopoda HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 41.7
Aqoxy5G00475 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 39.8
CiPaw.08G179100 Carya illinoinensis HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 38.0
MELO3C024679.2 Cucumis melo HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 39.8
CsaV3_1G045680 Cucumis sativus L. HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 39.8
FAN14G5346 Fragaria x ananassa HOM05D002815 ORTHO05D002827 2.8e-08 62.4 67 52.2
Gohir.D11G313500 Gossypium hirsutum HOM05D002472 ORTHO05D002827 2.8e-08 62.4 51 64.7
HanXRQChr10g0295161 Helianthus annuus HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 39.8
Lsat_1_v5_gn_2_65060 Lactuca sativa HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 38.0
Manes.09G156400 Manihot esculenta HOM05D002472 ORTHO05D002827 2.8e-08 62.4 108 38.9
Gorai.007G344700 Gossypium raimondii HOM05D002472 ORTHO05D002827 3.7e-08 62.0 51 64.7
Manes.08G127900 Manihot esculenta HOM05D002472 ORTHO05D002827 3.7e-08 62.0 112 39.3
Sed0025137 Sechium edule HOM05D002472 ORTHO05D002827 3.7e-08 62.0 108 38.0
Zm00001eb053770 Zea mays HOM05D002472 ORTHO05D002827 3.7e-08 62.0 109 41.3
Dinv11559 Davidia involucrata HOM05D002472 ORTHO05D002827 4.8e-08 61.6 109 39.4
FAN13G1811 Fragaria x ananassa HOM05D002472 ORTHO05D002827 4.8e-08 61.6 108 38.9
RcHm_v2.0_Chr3g0452121 Rosa chinensis HOM05D002472 ORTHO05D002827 4.8e-08 61.6 108 38.9
TWI36G0925 Tripterygium wilfordii HOM05D002472 ORTHO05D002827 4.8e-08 61.6 108 38.9
TAR142G0001 Trochodendron aralioides HOM05D002472 ORTHO05D002827 4.8e-08 61.6 73 46.6
TAR365G1134 Trochodendron aralioides HOM05D002472 ORTHO05D002827 4.8e-08 61.6 73 46.6
HPP92_023569 Vanilla planifolia HOM05D002472 ORTHO05D002827 4.8e-08 61.6 109 42.2
CSS0020760 Camellia sinensis var. sinensis HOM05D002472 ORTHO05D002827 6.2e-08 61.2 109 38.5
CDE10G0348 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 6.2e-08 61.2 108 38.9
CDE10G1257 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 6.2e-08 61.2 108 38.9
Ciclev10001390m.g Citrus clementina HOM05D002472 ORTHO05D002827 6.2e-08 61.2 108 38.0
FAN09G1742 Fragaria x ananassa HOM05D002472 ORTHO05D002827 6.2e-08 61.2 67 52.2
Actinidia30924 Actinidia chinensis HOM05D002472 ORTHO05D002827 8.1e-08 60.8 108 38.0
Carub.0002s0919 Capsella rubella HOM05D002472 ORTHO05D002827 8.1e-08 60.8 51 60.8
FvH4_6g03530 Fragaria vesca HOM05D002472 ORTHO05D002827 8.1e-08 60.8 51 64.7
FAN05G1065 Fragaria x ananassa HOM05D000053 ORTHO05D000448 8.1e-08 60.8 67 52.2
FAN09G2163 Fragaria x ananassa HOM05D002472 ORTHO05D002827 8.1e-08 60.8 67 52.2
AUR62000974 Chenopodium quinoa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 37.0
Dinv17758 Davidia involucrata HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 37.0
Thhalv10023937m.g Eutrema salsugineum HOM05D002472 ORTHO05D002827 1.1e-07 60.5 66 56.1
FAN02G1997 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 38.9
FAN05G1585 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 38.9
FAN05G3932 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 38.9
FAN09G3673 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 107 39.3
FAN14G0010 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 38.9
Hund22109 Selenicereus undatus HOM05D002472 ORTHO05D002827 1.1e-07 60.5 108 38.9
COL.COLO4_15262 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.4e-07 60.1 51 62.7
COL.COLO4_15277 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.4e-07 60.1 120 35.8
Glyma.03G245400 Glycine max HOM05D002472 ORTHO05D002827 1.8e-07 59.7 62 54.8
Medtr8g465010 Medicago truncatula HOM05D002472 ORTHO05D002827 1.8e-07 59.7 108 39.8
COL.COLO4_15281 Corchorus olitorius HOM05D002472 ORTHO05D002827 2.4e-07 59.3 121 36.4
Mapoly0007s0090 Marchantia polymorpha HOM05D002472 ORTHO05D002827 3.1e-07 58.9 113 38.1
AagrBONN_evm.TU.Sc2ySwM_368.470 Anthoceros agrestis HOM05D002472 ORTHO05D002827 4.0e-07 58.5 107 39.3
MD04G1220400 Malus domestica HOM05D002472 ORTHO05D002827 4.0e-07 58.5 108 36.1
FAN05G2994 Fragaria x ananassa HOM05D002472 ORTHO05D002827 5.3e-07 58.2 51 56.9
FAN05G4815 Fragaria x ananassa HOM05D002472 ORTHO05D002827 5.3e-07 58.2 51 56.9
Gohir.A11G298700 Gossypium hirsutum HOM05D002472 ORTHO05D002827 6.9e-07 57.8 51 62.7
HanXRQChr10g0295211 Helianthus annuus HOM05D002472 ORTHO05D002827 6.9e-07 57.8 104 38.5
Prupe.6G339400 Prunus persica HOM05D002472 ORTHO05D002827 6.9e-07 57.8 108 38.0
GSVIVG01021855001 Vitis vinifera HOM05D002472 ORTHO05D002827 6.9e-07 57.8 109 37.6
Sed0022641 Sechium edule HOM05D002472 ORTHO05D002827 9.0e-07 57.4 108 37.0
HanXRQChr10g0295231 Helianthus annuus HOM05D002472 ORTHO05D002827 1.2e-06 57.0 104 40.4
RcHm_v2.0_Chr3g0452001 Rosa chinensis HOM05D002472 ORTHO05D002827 1.2e-06 57.0 108 35.2
FvH4_6g03490 Fragaria vesca HOM05D002472 ORTHO05D002827 2.0e-06 56.2 51 56.9
FAN09G1451 Fragaria x ananassa HOM05D002472 ORTHO05D002827 2.0e-06 56.2 51 56.9
Actinidia05762 Actinidia chinensis HOM05D002472 ORTHO05D002827 2.6e-06 55.8 109 38.5
Lsat_1_v5_gn_2_65120 Lactuca sativa HOM05D002472 ORTHO05D002827 2.6e-06 55.8 104 39.4
Carub.0002s0917 Capsella rubella HOM05D002472 ORTHO05D002827 3.4e-06 55.5 51 54.9
CBR_g11898 Chara braunii HOM05D002472 ORTHO05D002827 4.5e-06 55.1 120 33.3
ECA238G3644 Erigeron canadensis HOM05D002472 ORTHO05D002827 4.5e-06 55.1 104 36.5
FAN14G3559 Fragaria x ananassa HOM05D002472 ORTHO05D002827 4.5e-06 55.1 51 54.9
Glyma.11G203600 Glycine max HOM05D002472 ORTHO05D002827 5.8e-06 54.7 48 58.3
Aqoxy6G02478 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 7.6e-06 54.3 107 33.6
HanXRQChr10g0295201 Helianthus annuus HOM05D002472 ORTHO05D002827 1.0e-05 53.9 107 36.4


User provided reference genes

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