Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.0e-102 376.7 185 100.0
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.9e-25 119.4 130 47.7
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 5.5e-24 115.2 138 45.7
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 2.2e-20 103.2 90 54.4
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 2.8e-20 102.8 151 41.1
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 1.4e-19 100.5 157 41.4
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 7.0e-19 98.2 156 41.7
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 2.0e-18 96.7 128 45.3
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 3.5e-18 95.9 150 40.7
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 4.5e-18 95.5 132 42.4
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 5.9e-18 95.1 91 53.8
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 5.9e-18 95.1 155 41.3
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 7.7e-18 94.7 131 43.5
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 7.7e-18 94.7 155 41.3
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.0e-17 94.4 148 39.2
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.3e-17 94.0 114 46.5
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 1.7e-17 93.6 158 38.6
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 2.9e-17 92.8 132 41.7
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 2.9e-17 92.8 117 41.9
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 3.8e-17 92.4 128 44.5
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 6.5e-17 91.7 132 42.4
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 8.5e-17 91.3 136 42.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.1e-16 90.9 95 46.3
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.5e-16 90.5 97 49.5
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 1.9e-16 90.1 97 49.5
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.9e-16 90.1 97 49.5
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.9e-16 90.1 174 35.1
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.9e-16 90.1 132 42.4
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 3.2e-16 89.4 114 40.4
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 3.2e-16 89.4 93 47.3
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 7.2e-16 88.2 130 40.0
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 1.2e-15 87.4 130 40.0
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 1.2e-15 87.4 130 40.0
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 1.2e-15 87.4 124 41.9
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.2e-15 87.4 96 47.9
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.2e-15 87.4 123 39.8
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 1.6e-15 87.0 137 40.1
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.6e-15 87.0 124 42.7
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 1.6e-15 87.0 136 37.5
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 2.1e-15 86.7 94 46.8
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 2.7e-15 86.3 124 43.5
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 2.7e-15 86.3 135 39.3
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.7e-15 86.3 133 41.4
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 3.6e-15 85.9 132 40.2
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 3.6e-15 85.9 97 49.5
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 3.6e-15 85.9 94 45.7
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 4.7e-15 85.5 124 41.1
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 4.7e-15 85.5 124 41.1
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 6.1e-15 85.1 123 41.5
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 6.1e-15 85.1 139 40.3
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 6.1e-15 85.1 121 39.7
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 8.0e-15 84.7 99 46.5
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 8.0e-15 84.7 127 40.9
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 8.0e-15 84.7 125 40.0
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 1.0e-14 84.3 128 39.8
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.0e-14 84.3 125 42.4
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.0e-14 84.3 94 43.6
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.0e-14 84.3 115 41.7
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.4e-14 84.0 125 42.4
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-14 84.0 125 42.4
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.4e-14 84.0 91 49.5
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.4e-14 84.0 91 49.5
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.4e-14 84.0 92 47.8
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.4e-14 84.0 96 50.0
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 1.8e-14 83.6 134 40.3
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.8e-14 83.6 160 34.4
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.8e-14 83.6 101 42.6
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.8e-14 83.6 91 49.5
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 1.8e-14 83.6 123 41.5
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 2.3e-14 83.2 125 38.4
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 3.0e-14 82.8 134 38.1
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 3.0e-14 82.8 112 44.6
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 3.0e-14 82.8 96 49.0
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 5.2e-14 82.0 99 47.5
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 5.2e-14 82.0 118 43.2
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 6.8e-14 81.6 119 42.0
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 6.8e-14 81.6 130 41.5
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 1.2e-13 80.9 124 38.7
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 1.2e-13 80.9 138 35.5
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 2.0e-13 80.1 91 48.4
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 2.0e-13 80.1 98 44.9
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.6e-13 79.7 125 37.6
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 2.6e-13 79.7 94 48.9
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 3.4e-13 79.3 99 41.4
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 3.4e-13 79.3 140 35.0
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 3.4e-13 79.3 125 40.8
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 4.4e-13 79.0 120 40.8
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 4.4e-13 79.0 94 47.9
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 4.4e-13 79.0 115 40.9
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 5.7e-13 78.6 121 38.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 5.7e-13 78.6 110 40.0
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 7.5e-13 78.2 122 39.3
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 7.5e-13 78.2 121 41.3
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 7.5e-13 78.2 88 46.6
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.3e-12 77.4 103 39.8
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 1.7e-12 77.0 138 35.5
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.7e-12 77.0 88 45.5
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 3.7e-12 75.9 87 48.3
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 3.7e-12 75.9 136 37.5
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 3.7e-12 75.9 127 40.2
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 1.4e-11 73.9 123 36.6
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.8e-11 73.6 82 42.7
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 2.4e-11 73.2 95 42.1
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.1e-11 72.8 81 45.7
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 3.1e-11 72.8 96 38.5
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 4.1e-11 72.4 158 36.7
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 5.4e-11 72.0 106 42.5
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 7.0e-11 71.6 91 44.0
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.0e-09 67.8 81 48.1
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-09 67.4 59 55.9
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.7e-09 67.0 58 56.9
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 2.3e-09 66.6 97 43.3
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.3e-09 66.6 58 55.2
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.6e-09 64.7 58 53.4
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.1e-08 64.3 124 37.1
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-08 64.3 55 56.4
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.2e-08 62.8 58 51.7
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 5.5e-08 62.0 58 51.7
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 7.2e-08 61.6 83 38.6
Lj3g0007083 Lotus japonicus HOM05D003731 ORTHO05D004429 1.2e-07 60.8 126 37.3
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 3.6e-07 59.3 92 43.5
CDE05G2375 Ceratophyllum demersum HOM05D006013 ORTHO05D007383 4.7e-07 58.9 85 38.8
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 4.7e-07 58.9 131 32.1
C06p13140 Brassica napus HOM05D003731 ORTHO05D004429 1.4e-06 57.4 128 35.2
BraA05t20855Z Brassica rapa HOM05D003731 ORTHO05D004429 2.3e-06 56.6 124 35.5
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 2.3e-06 56.6 112 32.1
BcaB04g19144 Brassica carinata HOM05D003731 ORTHO05D004429 3.0e-06 56.2 107 35.5
BcaC01g03525 Brassica carinata HOM05D003731 ORTHO05D004429 3.0e-06 56.2 107 35.5
BcaC08g43921 Brassica carinata HOM05D003731 ORTHO05D004429 3.0e-06 56.2 124 35.5
A03p42050 Brassica napus HOM05D003731 ORTHO05D004429 3.0e-06 56.2 126 32.5
BolC3t17432H Brassica oleracea HOM05D003731 ORTHO05D004429 3.0e-06 56.2 107 35.5
BolC6t36470H Brassica oleracea HOM05D003731 ORTHO05D004429 3.0e-06 56.2 124 35.5
BraA03t13359Z Brassica rapa HOM05D003731 ORTHO05D004429 3.0e-06 56.2 126 32.5
BcaB02g11256 Brassica carinata HOM05D003731 ORTHO05D004429 4.0e-06 55.8 124 35.5
C03p51470 Brassica napus HOM05D003731 ORTHO05D004429 4.0e-06 55.8 107 35.5
TAR623G1171 Trochodendron aralioides HOM05D006013 ORTHO05D007383 4.0e-06 55.8 70 38.6
A05p19510 Brassica napus HOM05D003731 ORTHO05D004429 5.2e-06 55.5 107 34.6
Mapoly0153s0003 Marchantia polymorpha HOM05D003731 ORTHO05D004429 5.2e-06 55.5 140 31.4
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 5.2e-06 55.5 70 40.0
Cre12.g520200 Chlamydomonas reinhardtii HOM05D003731 ORTHO05D004429 6.8e-06 55.1 75 41.3
PGR102G1715 Punica granatum HOM05D003731 ORTHO05D004429 6.8e-06 55.1 75 38.7
Sp1g38210 Schrenkiella parvula HOM05D003731 ORTHO05D004429 6.8e-06 55.1 124 35.5
HPP92_028311 Vanilla planifolia HOM05D003731 ORTHO05D004429 6.8e-06 55.1 112 33.9
Carub.0001s4041 Capsella rubella HOM05D003731 ORTHO05D004429 8.8e-06 54.7 124 34.7
Thhalv10011555m.g Eutrema salsugineum HOM05D003731 ORTHO05D004429 8.8e-06 54.7 124 34.7
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 8.8e-06 54.7 95 37.9
Zm00001eb232310 Zea mays HOM05D003731 ORTHO05D004429 8.8e-06 54.7 83 36.1


User provided reference genes

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