Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 4.5e-48 194.1 90 100.0
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 4.9e-26 120.9 89 61.8
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 3.2e-25 118.2 78 64.1
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 3.2e-25 118.2 78 65.4
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.1e-25 117.9 78 65.4
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.1e-25 117.9 78 65.4
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.1e-25 117.9 76 68.4
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 5.4e-25 117.5 89 59.6
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 9.2e-25 116.7 75 66.7
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 9.2e-25 116.7 83 62.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.2e-24 116.3 77 67.5
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.6e-24 115.9 85 57.6
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 1.6e-24 115.9 89 61.8
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.1e-24 115.5 78 61.5
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 2.1e-24 115.5 78 61.5
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.7e-24 115.2 80 63.8
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 6.0e-24 114.0 84 58.3
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 6.0e-24 114.0 79 65.8
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 6.0e-24 114.0 79 65.8
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 1.0e-23 113.2 86 58.1
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.0e-23 113.2 80 62.5
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-23 112.8 76 67.1
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-23 112.8 76 67.1
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-23 112.8 76 67.1
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.3e-23 112.8 75 65.3
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.3e-23 112.8 84 57.1
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.3e-23 112.8 89 55.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.3e-23 112.8 76 63.2
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.3e-23 112.8 83 56.6
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.7e-23 112.5 79 64.6
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.7e-23 112.5 78 62.8
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 2.3e-23 112.1 78 60.3
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 2.3e-23 112.1 76 65.8
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 2.3e-23 112.1 76 64.5
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 3.0e-23 111.7 81 55.6
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 3.9e-23 111.3 86 55.8
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 5.1e-23 110.9 76 63.2
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 5.1e-23 110.9 76 61.8
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.6e-23 110.5 76 61.8
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 6.6e-23 110.5 93 52.7
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 6.6e-23 110.5 75 61.3
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 6.6e-23 110.5 91 53.8
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 6.6e-23 110.5 78 60.3
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 6.6e-23 110.5 83 56.6
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 8.6e-23 110.2 76 61.8
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 8.6e-23 110.2 87 58.6
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-22 109.8 76 61.8
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 1.1e-22 109.8 75 64.0
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 1.1e-22 109.8 82 58.5
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.1e-22 109.8 75 62.7
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.1e-22 109.8 81 55.6
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.9e-22 109.0 75 61.3
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.5e-22 108.6 76 61.8
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 2.5e-22 108.6 76 61.8
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 5.6e-22 107.5 78 59.0
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 5.6e-22 107.5 76 60.5
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 7.3e-22 107.1 89 52.8
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 7.3e-22 107.1 76 60.5
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 7.3e-22 107.1 76 57.9
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 7.3e-22 107.1 79 58.2
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 7.3e-22 107.1 91 52.7
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 9.5e-22 106.7 65 69.2
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 9.5e-22 106.7 81 59.3
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 9.5e-22 106.7 76 60.5
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-21 106.3 89 52.8
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 1.2e-21 106.3 76 61.8
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.2e-21 106.3 86 57.0
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 1.6e-21 105.9 76 59.2
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.6e-21 105.9 75 64.0
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 2.1e-21 105.5 86 53.5
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.1e-21 105.5 86 55.8
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 2.1e-21 105.5 75 57.3
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 2.8e-21 105.1 79 57.0
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 2.8e-21 105.1 89 51.7
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 3.6e-21 104.8 75 61.3
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 3.6e-21 104.8 78 59.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.6e-21 104.8 78 59.0
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 4.7e-21 104.4 79 57.0
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 8.1e-21 103.6 78 56.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 8.1e-21 103.6 76 59.2
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-20 103.2 89 50.6
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 1.1e-20 103.2 76 59.2
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.4e-20 102.8 76 57.9
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.8e-20 102.4 85 52.9
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.4e-20 102.1 78 59.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 2.4e-20 102.1 76 59.2
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 3.1e-20 101.7 76 57.9
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 3.1e-20 101.7 76 56.6
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 4.0e-20 101.3 76 55.3
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 4.0e-20 101.3 76 55.3
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 4.0e-20 101.3 76 55.3
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.0e-20 101.3 76 57.9
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 5.2e-20 100.9 78 56.4
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 6.8e-20 100.5 76 56.6
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 6.8e-20 100.5 76 56.6
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 6.8e-20 100.5 76 56.6
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 8.9e-20 100.1 78 55.1
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.2e-19 99.8 76 56.6
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.2e-19 99.8 78 56.4
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.2e-19 99.8 114 44.7
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 1.2e-19 99.8 83 53.0
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.5e-19 99.4 76 57.9
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.0e-19 99.0 66 63.6
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 9.9e-19 96.7 64 60.9
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 9.9e-19 96.7 65 63.1
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.7e-18 95.9 65 63.1
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 2.9e-18 95.1 78 52.6
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.4e-17 92.8 81 49.4
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 3.2e-17 91.7 76 51.3
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 5.4e-17 90.9 78 50.0
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.6e-16 89.4 114 43.0
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.3e-15 86.3 96 44.8
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.3e-15 86.3 55 67.3
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.3e-15 86.3 69 50.7
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 5.1e-15 84.3 70 51.4
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 8.7e-15 83.6 77 50.6
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 4.3e-14 81.3 91 46.2
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.6e-13 78.2 76 44.7
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.6e-13 78.2 82 42.7
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.1e-12 76.6 67 49.3
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-12 76.6 67 49.3
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 9.0e-12 73.6 80 42.5
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.9e-10 67.8 94 40.4
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 1.9e-09 65.9 72 41.7
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 9.6e-06 53.5 78 42.3
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 9.6e-06 53.5 51 52.9


User provided reference genes

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