Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00192 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 7.8e-43 176.8 93 100.0
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 3.7e-29 131.3 72 100.0
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 2.2e-13 79.0 93 46.2
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 6.4e-13 77.4 93 45.2
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 1.1e-12 76.6 83 45.8
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 1.4e-12 76.3 93 45.2
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 1.4e-12 76.3 93 46.2
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 4.2e-12 74.7 93 43.0
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 4.2e-12 74.7 93 44.1
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 5.4e-12 74.3 89 42.7
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 5.4e-12 74.3 93 43.0
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 5.4e-12 74.3 93 44.1
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 7.1e-12 73.9 93 44.1
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 7.1e-12 73.9 93 44.1
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 7.1e-12 73.9 93 44.1
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 7.1e-12 73.9 93 43.0
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 7.1e-12 73.9 89 43.8
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 9.3e-12 73.6 93 44.1
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 9.3e-12 73.6 93 44.1
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 9.3e-12 73.6 93 44.1
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 9.3e-12 73.6 93 44.1
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 9.3e-12 73.6 89 42.7
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.2e-11 73.2 93 44.1
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 1.6e-11 72.8 93 43.0
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.6e-11 72.8 93 43.0
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.6e-11 72.8 93 43.0
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.6e-11 72.8 93 43.0
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.6e-11 72.8 93 43.0
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 1.6e-11 72.8 89 43.8
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 44.1
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 41.9
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 44.1
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 44.1
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 44.1
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 2.1e-11 72.4 93 40.9
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 2.7e-11 72.0 89 42.7
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 2.7e-11 72.0 93 41.9
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 3.5e-11 71.6 92 43.5
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 4.6e-11 71.2 89 43.8
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.6e-11 71.2 93 41.9
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 4.6e-11 71.2 89 43.8
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 4.6e-11 71.2 89 43.8
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 4.6e-11 71.2 89 43.8
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 4.6e-11 71.2 89 43.8
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 6.0e-11 70.9 93 43.0
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 7.8e-11 70.5 89 43.8
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 7.8e-11 70.5 93 43.0
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 7.8e-11 70.5 85 44.7
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 7.8e-11 70.5 93 40.9
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 7.8e-11 70.5 93 41.9
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 7.8e-11 70.5 89 42.7
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 7.8e-11 70.5 93 40.9
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 7.8e-11 70.5 93 43.0
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 43.0
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 41.9
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 40.9
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 40.9
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 40.9
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 1.0e-10 70.1 93 41.9
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 1.3e-10 69.7 89 40.4
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.3e-10 69.7 93 40.9
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 1.3e-10 69.7 89 41.6
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.7e-10 69.3 93 43.0
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 1.7e-10 69.3 85 44.7
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.7e-10 69.3 93 41.9
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 1.7e-10 69.3 93 41.9
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 2.3e-10 68.9 93 41.9
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 2.3e-10 68.9 89 42.7
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 2.3e-10 68.9 89 42.7
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 3.0e-10 68.6 90 44.4
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 3.0e-10 68.6 93 41.9
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 39.8
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 3.9e-10 68.2 89 40.4
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 3.9e-10 68.2 89 40.4
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 3.9e-10 68.2 93 40.9
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 5.1e-10 67.8 85 42.4
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 5.1e-10 67.8 95 45.3
TPR.G34410 Trifolium pratense HOM05D002316 ORTHO05D002280 5.1e-10 67.8 89 46.1
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 6.6e-10 67.4 93 41.9
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 6.6e-10 67.4 93 39.8
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 6.6e-10 67.4 93 39.8
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 6.6e-10 67.4 89 41.6
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 6.6e-10 67.4 96 39.6
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 6.6e-10 67.4 93 38.7
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 8.7e-10 67.0 93 39.8
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 8.7e-10 67.0 93 39.8
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 8.7e-10 67.0 93 40.9
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 8.7e-10 67.0 85 43.5
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 1.1e-09 66.6 93 39.8
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 1.1e-09 66.6 93 39.8
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 1.1e-09 66.6 93 39.8
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 1.1e-09 66.6 93 39.8
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 1.1e-09 66.6 89 42.7
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 1.1e-09 66.6 93 39.8
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 1.5e-09 66.2 93 39.8
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 1.9e-09 65.9 93 38.7
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.9e-09 65.9 102 42.2
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 1.9e-09 65.9 93 38.7
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 1.9e-09 65.9 93 40.9
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 1.9e-09 65.9 85 41.2
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.9e-09 65.9 93 40.9
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 2.5e-09 65.5 89 40.4
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 2.5e-09 65.5 93 38.7
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 4.3e-09 64.7 85 42.4
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 4.3e-09 64.7 93 37.6
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 4.3e-09 64.7 88 39.8
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 1.3e-08 63.2 93 37.6
SEGI_19970 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.3e-08 63.2 50 62.0
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 1.6e-08 62.8 103 38.8
HanXRQChr12g0373471 Helianthus annuus HOM05D002316 ORTHO05D002280 2.1e-08 62.4 85 41.2
Migut.H01980 Erythranthe guttata HOM05D002316 ORTHO05D002280 3.6e-08 61.6 89 44.9
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 4.8e-08 61.2 93 37.6
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 6.2e-08 60.8 85 43.5
PGSC0003DMG400015334 Solanum tuberosum HOM05D002316 ORTHO05D002280 6.2e-08 60.8 85 44.7
Cc05_g11320 Coffea canephora HOM05D002316 ORTHO05D002280 1.1e-07 60.1 85 43.5
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 1.1e-07 60.1 89 37.1
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.1e-07 60.1 105 34.3
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 1.1e-07 60.1 95 36.8
ECA234G4357 Erigeron canadensis HOM05D002316 ORTHO05D002280 1.4e-07 59.7 85 41.2
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.4e-07 59.7 85 43.5
Solyc12g014220.3 Solanum lycopersicum HOM05D002316 ORTHO05D002280 1.4e-07 59.7 85 44.7
EL10Ac4g08303 Beta vulgaris HOM05D002316 ORTHO05D002280 1.8e-07 59.3 85 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 2.4e-07 58.9 85 38.8
CAN.G292.5 Capsicum annuum HOM05D002316 ORTHO05D002280 2.4e-07 58.9 85 43.5
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 2.4e-07 58.9 93 38.7
MSTRG.14222 Avicennia marina HOM05D002316 ORTHO05D002280 3.1e-07 58.5 88 42.0
FAN21G3617 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.1e-07 58.5 85 44.7
unitig_699.g19234 Utricularia gibba HOM05D002316 ORTHO05D002280 4.0e-07 58.2 88 40.9
Aqoxy4G00417 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 1.2e-06 56.6 85 41.2
FvH4_3g18610 Fragaria vesca HOM05D002316 ORTHO05D002280 1.2e-06 56.6 84 44.0
RcHm_v2.0_Chr5g0031441 Rosa chinensis HOM05D002316 ORTHO05D002280 1.2e-06 56.6 85 43.5
AT1G53250 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 1.5e-06 56.2 85 40.0
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 1.5e-06 56.2 85 41.2
Psat7g098680 Pisum sativum HOM05D002316 ORTHO05D002280 1.5e-06 56.2 85 42.4
ClCG07G010030 Citrullus lanatus HOM05D002316 ORTHO05D002280 2.0e-06 55.8 85 41.2
Lsat_1_v5_gn_5_127320 Lactuca sativa HOM05D000043 ORTHO05D009639 2.0e-06 55.8 85 41.2
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 2.0e-06 55.8 94 34.0
GSVIVG01014224001 Vitis vinifera HOM05D002316 ORTHO05D002280 2.0e-06 55.8 85 42.4
Lalb_Chr19g0133871 Lupinus albus HOM05D002316 ORTHO05D002280 2.6e-06 55.5 85 38.8
Potri.011G112300 Populus trichocarpa HOM05D002316 ORTHO05D002280 2.6e-06 55.5 90 38.9
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 2.6e-06 55.5 111 34.2
SGA_v2.0_scaffold130G34313 Striga asiatica HOM05D002316 ORTHO05D002280 2.6e-06 55.5 93 40.9
Oeu061346.1 Olea europaea HOM05D002316 ORTHO05D002280 3.4e-06 55.1 85 43.5
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 3.4e-06 55.1 85 38.8
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 3.4e-06 55.1 85 40.0
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 3.4e-06 55.1 121 33.9
TAR624G0302 Trochodendron aralioides HOM05D002316 ORTHO05D002280 3.4e-06 55.1 85 40.0
HPP92_020167 Vanilla planifolia HOM05D002316 ORTHO05D002280 3.4e-06 55.1 85 41.2
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 4.4e-06 54.7 89 36.0
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 4.4e-06 54.7 89 34.8
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 4.4e-06 54.7 88 39.8
Nitab4.5_0000035g0100 Nicotiana tabacum HOM05D002316 ORTHO05D002280 4.4e-06 54.7 99 38.4
PSO063G2003 Papaver somniferum HOM05D002478 ORTHO05D002280 4.4e-06 54.7 85 40.0
PSO782G0144 Papaver somniferum HOM05D002478 ORTHO05D002280 4.4e-06 54.7 85 40.0
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 4.4e-06 54.7 85 40.0
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 4.4e-06 54.7 85 41.2
vmacro11915 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 4.4e-06 54.7 94 39.4
Actinidia12558 Actinidia chinensis HOM05D002316 ORTHO05D002280 5.8e-06 54.3 85 40.0
MELO3C016104.2 Cucumis melo HOM05D002316 ORTHO05D002280 5.8e-06 54.3 85 41.2
Lj8A150T53 Lonicera japonica HOM05D002316 ORTHO05D002280 5.8e-06 54.3 87 39.1
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 5.8e-06 54.3 85 38.8
A08p01710 Brassica napus HOM05D002316 ORTHO05D002280 9.9e-06 53.5 85 37.6
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 9.9e-06 53.5 87 37.9
MD11G1260000 Malus domestica HOM05D002316 ORTHO05D002280 9.9e-06 53.5 85 40.0
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 9.9e-06 53.5 85 37.6
Sabra16G0258200 Salix brachista HOM05D002316 ORTHO05D002280 9.9e-06 53.5 90 38.9
TWI38G1868 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 9.9e-06 53.5 85 40.0


User provided reference genes

Program Settings