Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00152 Sequoiadendron giganteum HOM05D002996 ORTHO05D021455 2.3e-154 548.9 279 100.0
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.2e-19 101.3 182 41.2
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 6.2e-19 99.0 177 37.9
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 3.1e-18 96.7 190 39.5
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.4e-17 92.8 178 38.8
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.7e-16 90.9 181 38.7
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.7e-16 90.9 178 36.5
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.7e-16 89.7 182 39.0
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 4.9e-16 89.4 178 39.9
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 6.4e-16 89.0 178 37.6
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 8.3e-16 88.6 178 38.8
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 8.3e-16 88.6 185 40.5
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.1e-15 88.2 213 34.3
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.4e-15 87.8 178 39.9
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 1.9e-15 87.4 178 38.8
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 1.9e-15 87.4 179 39.1
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.1e-15 86.3 177 37.9
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.4e-15 85.9 177 37.9
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 5.4e-15 85.9 181 38.1
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 9.2e-15 85.1 179 37.4
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 9.2e-15 85.1 182 36.8
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.2e-14 84.7 181 35.9
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 1.6e-14 84.3 201 34.3
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 1.6e-14 84.3 179 36.9
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.1e-14 84.0 182 36.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 2.7e-14 83.6 179 36.3
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.7e-14 83.6 183 37.7
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 4.6e-14 82.8 179 37.4
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 4.6e-14 82.8 178 37.6
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 4.6e-14 82.8 182 36.3
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.0e-14 82.4 179 36.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 6.0e-14 82.4 178 36.5
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 6.0e-14 82.4 181 39.2
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 7.8e-14 82.0 181 37.6
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.0e-13 81.6 179 38.0
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.3e-13 81.3 190 36.8
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 3.0e-13 80.1 184 36.4
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.0e-13 80.1 179 35.2
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 3.9e-13 79.7 179 38.0
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 6.6e-13 79.0 180 37.8
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 6.6e-13 79.0 181 38.1
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 8.6e-13 78.6 183 38.3
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 8.6e-13 78.6 183 38.3
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.1e-12 78.2 180 35.0
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 1.5e-12 77.8 198 33.8
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.5e-12 77.8 181 38.1
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 1.5e-12 77.8 181 37.6
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.5e-12 77.8 179 35.8
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 1.5e-12 77.8 179 35.8
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 2.5e-12 77.0 180 36.7
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 2.5e-12 77.0 177 36.2
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 4.3e-12 76.3 180 36.7
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 4.3e-12 76.3 200 33.5
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 4.3e-12 76.3 179 36.9
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 5.6e-12 75.9 178 39.3
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 5.6e-12 75.9 181 35.4
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 5.6e-12 75.9 179 35.8
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 5.6e-12 75.9 178 36.5
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 7.3e-12 75.5 183 37.7
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 7.3e-12 75.5 183 37.7
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 7.3e-12 75.5 183 36.1
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 7.3e-12 75.5 179 37.4
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 9.5e-12 75.1 185 36.2
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.6e-11 74.3 177 33.3
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.6e-11 74.3 183 35.0
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 2.1e-11 73.9 182 37.4
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 2.1e-11 73.9 181 38.7
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.1e-11 73.9 179 34.6
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 2.1e-11 73.9 182 34.1
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.1e-11 73.9 177 35.0
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.8e-11 73.6 178 37.6
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.8e-11 73.6 183 35.5
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 2.8e-11 73.6 182 35.7
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 3.6e-11 73.2 177 36.2
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 3.6e-11 73.2 177 36.2
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 3.6e-11 73.2 179 36.9
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 4.7e-11 72.8 187 34.8
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.7e-11 72.8 207 34.8
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 4.7e-11 72.8 182 35.2
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 4.7e-11 72.8 179 34.6
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 6.2e-11 72.4 188 34.6
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 6.2e-11 72.4 180 36.1
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 6.2e-11 72.4 178 35.4
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 6.2e-11 72.4 181 32.6
vmacro05510 Vaccinium macrocarpon HOM05D002996 ORTHO05D021455 6.2e-11 72.4 189 33.9
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 6.2e-11 72.4 179 35.8
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.1e-10 71.6 186 36.0
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 1.1e-10 71.6 177 31.6
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-10 71.2 179 34.6
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.4e-10 71.2 179 34.6
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.4e-10 71.2 183 34.4
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-10 70.9 180 33.3
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.8e-10 70.9 184 35.3
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 2.4e-10 70.5 177 35.6
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 2.4e-10 70.5 178 36.0
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.4e-10 70.5 184 35.3
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 3.1e-10 70.1 178 35.4
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 3.1e-10 70.1 180 36.1
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 3.1e-10 70.1 202 31.2
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 4.0e-10 69.7 184 36.4
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 4.0e-10 69.7 135 40.0
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 4.0e-10 69.7 181 35.4
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 4.0e-10 69.7 181 35.9
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 4.0e-10 69.7 183 36.1
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 4.0e-10 69.7 181 33.7
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 4.0e-10 69.7 222 32.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 5.2e-10 69.3 181 37.0
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 5.2e-10 69.3 179 33.0
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.8e-10 68.9 187 35.3
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 6.8e-10 68.9 180 33.9
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 6.8e-10 68.9 217 33.6
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 6.8e-10 68.9 178 34.3
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 8.9e-10 68.6 180 35.0
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.2e-09 68.2 178 33.1
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.5e-09 67.8 181 37.0
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 2.6e-09 67.0 179 33.5
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.6e-09 67.0 179 31.8
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.4e-09 66.6 177 32.8
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 4.4e-09 66.2 182 33.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 5.8e-09 65.9 178 30.9
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 7.6e-09 65.5 199 31.7
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 7.6e-09 65.5 186 33.9
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.8e-08 63.2 168 33.3
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 4.9e-08 62.8 218 31.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 4.9e-08 62.8 177 29.4
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.4e-08 62.4 217 31.3
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.1e-07 61.6 182 33.5
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.4e-07 61.2 218 31.2
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.4e-07 61.2 43 60.5
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 2.4e-07 60.5 215 30.7
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 3.2e-07 60.1 110 33.6
Actinidia17658 Actinidia chinensis HOM05D002996 ORTHO05D003536 5.4e-07 59.3 33 75.8
Thhalv10021119m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 9.2e-07 58.5 110 34.5
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 9.2e-07 58.5 64 46.9
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-06 58.2 213 30.0
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.6e-06 57.8 177 30.5
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.6e-06 57.8 81 42.0
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 6.0e-06 55.8 109 34.9
Lsat_1_v5_gn_6_41640 Lactuca sativa HOM05D002996 ORTHO05D021455 6.0e-06 55.8 57 49.1
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 7.8e-06 55.5 182 31.3


User provided reference genes

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