Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.6e-238 827.8 402 100.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.5e-170 602.4 303 96.7
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.7e-147 526.6 351 72.9
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 3.8e-147 525.4 351 73.8
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.8e-147 525.4 351 72.6
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.3e-146 522.3 351 72.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 5.6e-146 521.5 351 72.9
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 5.6e-146 521.5 354 71.2
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.3e-146 521.2 417 63.8
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 7.3e-146 521.2 351 71.5
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.6e-145 520.0 421 63.4
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.1e-145 519.6 351 71.5
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.8e-145 519.2 417 63.5
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.8e-145 519.2 351 72.6
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.6e-145 518.8 351 72.4
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 3.6e-145 518.8 417 64.0
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.7e-145 518.5 417 63.8
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.0e-144 517.3 351 70.9
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.4e-144 516.9 417 64.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.3e-144 516.2 352 71.3
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 2.3e-144 516.2 417 63.3
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 3.0e-144 515.8 418 63.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 3.0e-144 515.8 351 72.1
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.0e-144 515.8 423 63.6
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 3.0e-144 515.8 370 68.9
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.9e-144 514.2 417 63.5
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.2e-143 513.8 351 70.4
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.5e-143 513.5 417 63.1
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.0e-143 513.1 350 70.9
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.4e-143 512.3 351 71.5
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 9.8e-143 510.8 351 70.9
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.2e-142 509.6 351 70.9
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.2e-142 509.6 351 71.5
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.4e-141 506.1 351 69.8
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.4e-141 506.1 353 71.4
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 2.4e-141 506.1 351 69.8
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 3.2e-141 505.8 351 70.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.2e-141 505.8 351 70.1
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 3.2e-141 505.8 351 71.2
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 5.4e-141 505.0 417 62.4
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.0e-141 504.6 418 62.9
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.7e-140 502.7 351 70.9
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 4.6e-140 501.9 351 70.7
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 5.9e-140 501.5 351 68.9
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 5.9e-140 501.5 351 70.1
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 5.9e-140 501.5 351 70.7
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.0e-139 500.7 418 61.7
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.3e-139 500.4 352 68.8
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.3e-139 500.4 351 69.5
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.3e-139 499.6 351 70.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 2.3e-139 499.6 362 68.5
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.3e-139 499.6 335 74.0
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 3.0e-139 499.2 355 69.3
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.9e-139 498.8 351 69.5
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 3.9e-139 498.8 351 69.5
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.9e-139 498.8 351 70.7
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 3.9e-139 498.8 404 63.6
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.0e-139 498.4 394 64.2
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 5.0e-139 498.4 351 70.9
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 6.6e-139 498.0 352 70.5
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 6.6e-139 498.0 351 70.7
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.5e-138 496.9 351 69.2
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.5e-138 496.9 351 70.1
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.9e-138 496.5 352 70.2
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.3e-138 495.7 351 69.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 4.3e-138 495.4 376 66.0
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 5.6e-138 495.0 350 69.4
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 5.6e-138 495.0 351 69.2
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 9.5e-138 494.2 352 70.2
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.2e-137 493.8 350 68.6
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.8e-137 492.7 351 69.8
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 2.8e-137 492.7 353 69.7
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 6.2e-137 491.5 351 69.8
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 8.0e-137 491.1 351 68.9
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.8e-136 490.0 351 69.5
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.1e-136 489.2 322 72.4
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 8.9e-136 487.6 352 68.8
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 8.9e-136 487.6 352 66.8
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.6e-135 486.1 364 66.5
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 3.4e-135 485.7 420 61.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 7.5e-135 484.6 352 69.6
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 7.5e-135 484.6 353 68.8
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.3e-134 483.8 351 67.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.7e-134 483.4 351 67.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.7e-134 483.4 350 67.1
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.7e-134 483.4 387 64.3
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 2.2e-134 483.0 414 58.2
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.9e-134 482.6 335 70.7
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.4e-134 481.5 335 70.7
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 6.4e-134 481.5 422 58.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 6.4e-134 481.5 336 70.5
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 3.2e-133 479.2 358 67.9
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.4e-133 478.4 323 71.5
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.5e-132 475.7 363 65.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 7.8e-132 474.6 351 66.7
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 7.8e-132 474.6 351 66.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 7.8e-132 474.6 351 66.1
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.0e-131 474.2 351 66.4
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.3e-131 473.0 355 66.2
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.0e-131 472.6 351 66.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.0e-131 472.6 351 66.1
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.0e-131 472.6 351 66.1
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 3.0e-131 472.6 351 65.8
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.0e-131 472.6 351 65.5
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 5.0e-131 471.9 352 66.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 6.6e-131 471.5 351 66.7
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-130 470.7 351 66.4
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.5e-130 470.3 351 66.4
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.5e-130 469.5 351 66.1
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.2e-129 467.2 435 57.0
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.1e-129 466.5 351 65.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 8.1e-129 464.5 456 54.2
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 8.9e-128 461.1 441 56.0
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 7.1e-125 451.4 466 53.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.2e-124 450.7 332 66.9
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.2e-124 450.7 341 66.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.5e-122 443.7 347 64.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 8.9e-120 434.5 351 62.1
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.7e-116 422.9 321 62.3
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-115 420.6 351 61.5
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.8e-113 412.9 305 66.6
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.8e-110 402.5 335 62.4
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.9e-109 400.2 232 77.6
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.9e-109 400.2 232 77.6
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 2.7e-92 343.2 201 77.1
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.9e-74 283.9 353 44.5
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 5.7e-74 282.3 218 65.1
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 7.7e-71 271.9 335 44.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 4.6e-68 262.7 282 48.9
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.8e-67 258.5 159 74.2
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.8e-67 258.5 159 74.2
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-66 258.1 159 74.2
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-66 258.1 159 74.2
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-64 249.6 159 73.0
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.7e-62 244.2 194 64.9
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 5.0e-62 242.7 138 76.8
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 6.3e-41 172.6 106 76.4
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.0e-39 167.5 94 81.9
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-39 166.4 93 82.8
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.3e-38 164.9 358 31.8
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-37 160.6 106 70.8
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 2.8e-33 147.1 117 62.4
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.5e-31 140.2 91 69.2
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 3.3e-29 133.7 91 69.2
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 7.8e-15 85.9 75 56.0
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.9e-09 67.4 123 38.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.2e-07 62.0 77 48.1
SEGI_05402 Sequoiadendron giganteum HOM05D000531 ORTHO05D001630 6.6e-06 56.2 68 50.0


User provided reference genes

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