Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 9.7e-110 400.2 208 100.0
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 8.0e-72 274.2 211 69.7
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 9.5e-57 224.2 204 56.4
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.2e-56 223.8 205 57.6
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.6e-56 222.2 205 58.0
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 6.1e-56 221.5 208 55.8
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 1.8e-55 219.9 208 53.8
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 1.8e-55 219.9 208 53.8
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 6.8e-55 218.0 208 54.3
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 8.9e-55 217.6 192 56.8
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.2e-54 217.2 208 53.4
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 1.5e-54 216.9 200 57.0
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 2.0e-54 216.5 208 53.4
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 2.0e-54 216.5 192 56.2
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 2.6e-54 216.1 199 56.8
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 4.4e-54 215.3 200 56.0
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 7.5e-54 214.5 206 52.4
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 7.5e-54 214.5 208 53.8
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.3e-53 213.8 206 52.4
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 2.2e-53 213.0 209 55.0
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 2.2e-53 213.0 208 53.4
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 3.7e-53 212.2 200 54.0
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.7e-53 212.2 200 54.0
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 3.7e-53 212.2 208 51.9
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 3.7e-53 212.2 191 56.0
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 4.9e-53 211.8 212 54.2
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 4.9e-53 211.8 208 52.9
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 6.4e-53 211.5 208 52.9
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 6.4e-53 211.5 203 54.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 8.3e-53 211.1 186 58.1
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 8.3e-53 211.1 203 55.2
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 8.3e-53 211.1 206 52.4
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 8.3e-53 211.1 208 52.9
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 1.1e-52 210.7 211 53.6
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.4e-52 210.3 215 54.0
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 1.4e-52 210.3 205 55.1
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.4e-52 210.3 208 51.4
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 2.4e-52 209.5 194 56.2
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 3.2e-52 209.1 201 52.2
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 3.2e-52 209.1 203 53.2
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 3.2e-52 209.1 208 52.4
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 4.1e-52 208.8 208 52.9
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 7.0e-52 208.0 208 53.8
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 9.2e-52 207.6 187 55.6
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 9.2e-52 207.6 210 52.4
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 2.0e-51 206.5 201 52.7
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 2.7e-51 206.1 190 54.2
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 2.7e-51 206.1 202 52.5
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 3.5e-51 205.7 208 51.9
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.6e-51 205.3 210 51.9
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 7.8e-51 204.5 208 52.9
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.0e-50 204.1 208 50.5
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 1.0e-50 204.1 208 51.4
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.0e-50 204.1 198 53.5
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 1.7e-50 203.4 198 53.5
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 2.3e-50 203.0 191 55.0
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.3e-50 203.0 197 53.3
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 3.0e-50 202.6 203 53.2
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 3.9e-50 202.2 208 52.4
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.9e-50 202.2 207 50.7
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 3.9e-50 202.2 211 52.1
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 5.0e-50 201.8 203 51.7
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 6.6e-50 201.4 195 54.4
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 8.6e-50 201.1 195 53.8
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 8.6e-50 201.1 195 52.8
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 1.5e-49 200.3 208 50.5
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.9e-49 199.9 196 51.5
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 1.9e-49 199.9 195 52.8
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 1.9e-49 199.9 207 50.7
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.5e-49 199.5 208 51.4
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.5e-49 199.5 203 51.2
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 3.3e-49 199.1 206 51.0
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.3e-49 198.7 207 50.7
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 4.3e-49 198.7 191 51.8
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 1.2e-48 197.2 201 51.7
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 1.6e-48 196.8 195 51.3
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 6.2e-48 194.9 206 49.0
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 1.1e-47 194.1 201 51.7
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 1.4e-47 193.7 204 51.5
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.8e-47 193.4 207 49.3
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 1.8e-47 193.4 199 50.3
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.3e-47 193.0 204 51.5
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 3.1e-47 192.6 193 52.3
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 3.1e-47 192.6 208 49.0
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 3.1e-47 192.6 207 52.2
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 4.0e-47 192.2 197 51.3
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 5.2e-47 191.8 203 48.3
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 5.2e-47 191.8 207 48.8
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 5.2e-47 191.8 207 49.8
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 6.8e-47 191.4 207 48.8
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 6.8e-47 191.4 207 48.8
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 1.5e-46 190.3 207 48.8
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 1.5e-46 190.3 207 48.8
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 3.4e-46 189.1 207 48.3
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 4.4e-46 188.7 207 48.3
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 7.5e-46 188.0 206 48.5
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 7.5e-46 188.0 191 52.4
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 4.9e-45 185.3 206 48.1
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 4.9e-45 185.3 204 47.1
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 6.4e-45 184.9 193 51.3
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 8.3e-45 184.5 189 49.2
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.1e-44 184.1 189 48.1
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 1.4e-44 183.7 208 48.1
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 2.4e-44 183.0 192 50.5
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.2e-44 182.6 196 49.0
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 6.0e-43 178.3 183 54.6
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 1.3e-42 177.2 97 81.4
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 8.6e-42 174.5 198 46.5
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 5.6e-41 171.8 95 82.1
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 1.4e-39 167.2 177 49.7
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 3.1e-39 166.0 94 77.7
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 7.5e-38 161.4 95 75.8
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 1.7e-37 160.2 195 43.1
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 3.5e-35 152.5 169 49.7
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 4.6e-35 152.1 97 73.2
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.3e-33 146.0 95 69.5
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 5.6e-25 118.6 152 44.1
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 4.3e-17 92.4 159 40.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.4e-15 87.4 42 85.7
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 1.0e-10 71.2 80 47.5
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.0e-10 69.7 35 77.1
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 2.5e-09 66.6 52 57.7
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.3e-09 65.9 35 88.6
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.5e-06 57.4 65 49.2
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 2.0e-06 57.0 35 68.6
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 2.0e-06 57.0 35 68.6
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 2.0e-06 57.0 55 58.2


User provided reference genes

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