Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0240200 Rhododendron simsii HOM05D000054 ORTHO05D010039 8.5e-50 201.4 96 100.0
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.3e-10 70.5 40 82.5
Rhsim06G0236300 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.6e-10 68.9 40 80.0
Rhsim09G0135300 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.5e-09 67.8 40 82.5
vmacro11709 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 2.5e-09 67.0 38 84.2
Rhsim06G0241100 Rhododendron simsii HOM05D000054 ORTHO05D000286 7.3e-09 65.5 40 75.0
RcHm_v2.0_Chr5g0025931 Rosa chinensis HOM05D000054 ORTHO05D000286 1.2e-08 64.7 36 83.3
Dinv00485 Davidia involucrata HOM05D000054 ORTHO05D000286 2.1e-08 63.9 65 50.8
RcHm_v2.0_Chr2g0114861 Rosa chinensis HOM05D000054 ORTHO05D010039 3.6e-08 63.2 40 77.5
Rhsim01G0036400 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.2e-08 62.4 39 76.9
RhsimUnG0039500 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.2e-08 62.4 36 83.3
GSVIVG01029720001 Vitis vinifera HOM05D000054 ORTHO05D000286 8.1e-08 62.0 38 76.3
CSS0049836 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.1e-07 61.6 39 71.8
DCAR_019923 Daucus carota HOM05D000054 ORTHO05D000286 1.4e-07 61.2 38 73.7
Dinv00486 Davidia involucrata HOM05D000054 ORTHO05D010039 1.4e-07 61.2 39 71.8
GSVIVG01029718001 Vitis vinifera HOM05D000054 ORTHO05D000171 1.8e-07 60.8 38 73.7
FvH4_1g21070 Fragaria vesca HOM05D000054 ORTHO05D000286 2.4e-07 60.5 39 74.4
FAN26G2319 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.4e-07 60.5 39 74.4
RhsimUnG0239700 Rhododendron simsii HOM05D013967 ORTHO05D010247 2.4e-07 60.5 36 80.6
Sabra07G0053900 Salix brachista HOM05D005601 ORTHO05D010039 3.1e-07 60.1 39 69.2
Peaxi162Scf00452g00624 Petunia axillaris HOM05D000054 ORTHO05D000286 4.0e-07 59.7 40 72.5
QL04p064575 Quercus lobata HOM05D000054 ORTHO05D010039 4.0e-07 59.7 39 76.9
Prupe.4G136900 Prunus persica HOM05D000054 ORTHO05D000171 5.2e-07 59.3 39 74.4
Thecc.07G163600 Theobroma cacao HOM05D000054 ORTHO05D000171 5.2e-07 59.3 43 65.1
A07p36710 Brassica napus HOM05D000054 ORTHO05D000286 6.8e-07 58.9 39 69.2
BraA07t31239Z Brassica rapa HOM05D000054 ORTHO05D000286 6.8e-07 58.9 39 69.2
Ciclev10007054m.g Citrus clementina HOM05D000054 ORTHO05D000286 6.8e-07 58.9 39 69.2
A02p16450 Brassica napus HOM05D000054 ORTHO05D000286 8.9e-07 58.5 39 66.7
QL04p037764 Quercus lobata HOM05D000054 ORTHO05D000286 8.9e-07 58.5 49 59.2
Duzib187G0821 Durio zibethinus HOM05D000054 ORTHO05D000171 1.2e-06 58.2 43 65.1
BcaB05g24556 Brassica carinata HOM05D000054 ORTHO05D000286 1.5e-06 57.8 39 66.7
BraA02t06704Z Brassica rapa HOM05D000054 ORTHO05D000286 1.5e-06 57.8 39 66.7
Gorai.002G105800 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.5e-06 57.8 42 64.3
GSVIVG01029729001 Vitis vinifera HOM05D000054 ORTHO05D010039 1.5e-06 57.8 39 74.4
RcHm_v2.0_Chr5g0025891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.0e-06 57.4 39 66.7
BcaB05g24345 Brassica carinata HOM05D000054 ORTHO05D000286 2.6e-06 57.0 39 69.2
BcaC08g46474 Brassica carinata HOM05D000054 ORTHO05D000286 2.6e-06 57.0 39 66.7
C06p44130 Brassica napus HOM05D000054 ORTHO05D000286 2.6e-06 57.0 39 66.7
BolC6t39485H Brassica oleracea HOM05D000054 ORTHO05D000286 2.6e-06 57.0 39 66.7
Hma1.2p1_0151F.1_g067490 Hydrangea macrophylla HOM05D000054 ORTHO05D010039 2.6e-06 57.0 39 69.2
Manes.06G174700 Manihot esculenta HOM05D000054 ORTHO05D000171 2.6e-06 57.0 39 69.2
Rhsim09G0135900 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.6e-06 57.0 34 79.4
Sopen07g034710 Solanum pennellii HOM05D000054 ORTHO05D000171 2.6e-06 57.0 39 69.2
CAN.G943.47 Capsicum annuum HOM05D000054 ORTHO05D000286 3.4e-06 56.6 39 71.8
Sc09g0007670 Simmondsia chinensis HOM05D000054 ORTHO05D000171 3.4e-06 56.6 39 66.7
Solyc07g066550.4 Solanum lycopersicum HOM05D000054 ORTHO05D000286 3.4e-06 56.6 39 66.7
DCAR_019924 Daucus carota HOM05D000054 ORTHO05D000171 4.4e-06 56.2 38 71.1
AT1G56120 Arabidopsis thaliana HOM05D000054 ORTHO05D000286 5.8e-06 55.8 39 66.7
BcaB03g14786 Brassica carinata HOM05D000054 ORTHO05D000286 5.8e-06 55.8 39 66.7
CSS0045054 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 5.8e-06 55.8 39 69.2
HanXRQChr02g0037501 Helianthus annuus HOM05D000054 ORTHO05D000286 5.8e-06 55.8 41 63.4
BcaC03g15175 Brassica carinata HOM05D000054 ORTHO05D000286 7.6e-06 55.5 39 61.5
C02p27520 Brassica napus HOM05D000054 ORTHO05D000286 7.6e-06 55.5 39 61.5
BolC2t08810H Brassica oleracea HOM05D000054 ORTHO05D000286 7.6e-06 55.5 39 61.5
Potri.007G067900 Populus trichocarpa HOM05D000054 ORTHO05D000286 7.6e-06 55.5 39 66.7


User provided reference genes

Program Settings