Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.0e-209 732.3 382 100.0
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.0e-209 732.3 382 100.0
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 6.7e-141 504.6 387 71.6
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 2.8e-115 419.5 371 59.6
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.0e-114 414.8 324 70.4
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.8e-107 392.9 376 58.0
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 5.5e-103 378.6 373 56.8
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.2e-102 377.5 377 56.2
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.0e-101 374.4 367 56.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 5.2e-101 372.1 372 55.4
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 2.0e-100 370.2 364 54.1
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.4e-98 364.0 376 52.9
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.8e-98 363.6 365 54.2
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 5.4e-98 362.1 376 54.0
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.6e-97 360.5 369 53.7
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.0e-96 357.8 369 56.1
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.8e-96 355.9 387 51.2
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 6.5e-96 355.1 361 52.9
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 2.5e-95 353.2 381 54.1
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 4.2e-95 352.4 383 53.3
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 4.2e-95 352.4 370 52.2
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 4.2e-95 352.4 377 50.4
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 4.2e-95 352.4 378 51.3
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.2e-94 350.9 373 53.6
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.2e-94 350.9 379 50.4
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.7e-94 349.0 360 53.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.7e-94 349.0 360 53.1
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 4.7e-94 349.0 393 51.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 6.1e-94 348.6 381 50.7
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.0e-93 347.8 371 52.8
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.4e-93 347.4 376 56.1
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.8e-93 347.1 362 53.6
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.3e-93 346.7 378 55.8
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 8.8e-93 344.7 375 51.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.2e-92 344.4 367 52.3
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.6e-92 343.2 379 52.2
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.4e-92 342.8 383 51.7
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 3.4e-92 342.8 362 52.2
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 3.4e-92 342.8 374 50.3
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 5.7e-92 342.0 377 50.1
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 7.5e-92 341.7 380 51.1
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 9.8e-92 341.3 366 50.3
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.7e-91 340.5 361 51.2
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.7e-91 339.3 372 51.9
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 4.9e-91 339.0 372 53.2
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 6.3e-91 338.6 366 51.9
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 8.3e-91 338.2 365 52.6
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.4e-90 337.4 396 49.2
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.4e-90 336.7 357 52.4
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 7.0e-90 335.1 357 52.4
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 9.1e-90 334.7 357 52.9
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.2e-89 334.3 365 51.0
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.2e-89 334.3 355 51.5
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.6e-89 334.0 372 54.3
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.6e-89 334.0 375 49.9
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 2.7e-89 333.2 356 52.2
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.9e-89 332.0 371 49.3
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 5.9e-89 332.0 388 50.0
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.3e-88 330.9 381 49.3
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.7e-88 330.5 376 49.5
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.7e-88 330.5 363 50.4
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.7e-88 330.5 363 50.4
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.7e-88 330.5 363 50.4
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.7e-88 330.5 363 50.4
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 2.3e-88 330.1 391 49.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 3.8e-88 329.3 379 48.8
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.0e-88 328.9 376 49.2
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.5e-87 327.4 359 49.0
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.5e-87 327.4 372 50.8
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.5e-87 327.4 365 51.0
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.9e-87 327.0 372 48.7
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 3.3e-87 326.2 363 50.7
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 5.6e-87 325.5 372 48.9
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 7.2e-87 325.1 357 50.7
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 9.5e-87 324.7 357 50.7
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.1e-86 323.6 344 52.3
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.1e-86 323.6 359 49.6
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.8e-86 323.2 359 48.5
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.0e-85 321.2 369 51.2
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.0e-85 321.2 356 51.7
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.2e-84 317.8 374 50.8
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.5e-84 317.4 354 51.4
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 2.0e-84 317.0 359 49.3
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 3.4e-84 316.2 359 49.9
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 2.2e-83 313.5 362 47.8
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.2e-83 313.5 359 49.9
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 4.9e-83 312.4 384 46.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 9.2e-82 308.1 299 52.8
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.2e-81 307.8 373 47.7
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.6e-81 307.4 377 47.7
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 2.7e-81 306.6 373 47.5
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 5.9e-81 305.4 380 47.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.3e-80 303.5 299 51.2
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.9e-77 291.6 172 78.5
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.6e-73 280.8 355 44.8
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 4.7e-70 269.2 364 44.5
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 8.1e-70 268.5 378 43.4
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 6.8e-69 265.4 369 42.3
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 6.4e-67 258.8 363 43.5
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 7.8e-65 251.9 168 66.1
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.1e-61 241.5 165 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 2.9e-59 233.4 362 38.7
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.1e-58 231.5 367 40.1
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.6e-57 227.6 353 36.0
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 9.6e-55 218.4 335 40.6
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 9.6e-55 218.4 182 57.7
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 8.1e-54 215.3 358 39.1
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.4e-53 214.5 370 37.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.8e-52 209.1 133 69.9
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 2.9e-51 206.8 369 39.0
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 8.1e-46 188.7 158 54.4
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 9.0e-45 185.3 131 63.4
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 8.4e-43 178.7 268 40.7
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 6.0e-41 172.6 360 35.8
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 4.8e-38 162.9 367 32.4
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.0e-32 145.2 363 33.1
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.1e-31 141.7 332 28.3
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.8e-29 134.4 240 37.1
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.4e-29 134.0 349 32.1
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 9.0e-29 132.1 86 72.1
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-26 124.8 363 31.1
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.3e-24 118.2 275 35.6
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.3e-23 113.2 91 63.7
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 7.4e-23 112.5 132 54.5
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 9.6e-23 112.1 131 52.7
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 6.3e-22 109.4 77 66.2
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.1e-21 108.6 69 66.7
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 2.5e-15 87.4 82 51.2
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.3e-15 86.7 131 43.5
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 2.6e-12 77.4 145 27.6
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 2.1e-09 67.8 317 23.7
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.1e-07 62.0 58 55.2
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.5e-07 60.8 157 37.6
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 8.2e-06 55.8 52 46.2


User provided reference genes

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