Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 7.8e-97 357.1 173 100.0
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 4.0e-77 291.6 173 82.7
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.3e-64 250.0 166 72.3
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 8.1e-62 240.7 179 67.0
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 9.3e-58 227.3 157 69.4
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.2e-57 226.9 149 71.8
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 1.0e-56 223.8 148 69.6
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.3e-56 223.4 147 72.8
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.8e-56 223.0 149 67.8
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.9e-55 219.5 141 72.3
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 3.3e-55 218.8 141 71.6
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 4.3e-55 218.4 142 69.7
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 1.6e-54 216.5 155 63.9
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 2.8e-54 215.7 172 59.9
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 4.8e-54 214.9 159 63.5
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 1.1e-53 213.8 150 66.0
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.4e-53 213.4 173 59.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 2.4e-53 212.6 155 64.5
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 3.1e-53 212.2 168 60.7
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 4.1e-53 211.8 159 64.8
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.1e-53 211.8 155 64.5
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 5.3e-53 211.5 151 64.2
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 6.9e-53 211.1 146 66.4
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.6e-52 209.1 156 64.1
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 1.7e-51 206.5 129 72.1
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 1.7e-51 206.5 143 67.1
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 2.2e-51 206.1 159 61.0
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 3.8e-51 205.3 158 63.9
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 5.0e-51 204.9 167 58.7
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 5.0e-51 204.9 127 75.6
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 5.0e-51 204.9 163 61.3
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 5.0e-51 204.9 160 58.1
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 6.5e-51 204.5 129 71.3
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 8.4e-51 204.1 153 63.4
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 8.4e-51 204.1 160 57.5
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 1.1e-50 203.8 156 59.6
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 1.1e-50 203.8 141 67.4
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.9e-50 203.0 161 63.4
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 3.2e-50 202.2 151 61.6
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 7.1e-50 201.1 163 62.6
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 9.3e-50 200.7 156 59.6
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 9.3e-50 200.7 139 67.6
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.2e-49 200.3 149 60.4
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 1.6e-49 199.9 159 63.5
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.5e-49 198.7 158 58.9
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 4.6e-49 198.4 159 63.5
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 6.1e-49 198.0 149 59.7
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 6.1e-49 198.0 149 59.7
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 7.9e-49 197.6 142 62.0
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.8e-48 196.4 159 63.5
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.0e-48 195.7 133 67.7
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 3.0e-48 195.7 164 56.7
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 6.7e-48 194.5 151 58.3
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.9e-47 193.0 161 58.4
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.9e-47 193.0 155 57.4
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 1.9e-47 193.0 161 56.5
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 3.3e-47 192.2 161 55.9
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 3.3e-47 192.2 156 57.1
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 4.3e-47 191.8 156 57.1
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.3e-47 191.8 162 58.6
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 1.6e-46 189.9 157 56.7
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 1.6e-46 189.9 136 62.5
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 2.2e-46 189.5 157 54.8
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 2.2e-46 189.5 155 60.6
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 2.2e-46 189.5 162 58.0
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 4.8e-46 188.3 157 54.1
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 4.8e-46 188.3 155 58.7
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.8e-46 188.3 151 57.0
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 6.3e-46 188.0 157 54.1
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 6.3e-46 188.0 157 54.1
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 1.1e-45 187.2 157 54.1
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.8e-45 186.4 157 53.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.4e-45 186.0 158 53.2
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 2.4e-45 186.0 136 61.0
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 3.1e-45 185.7 136 63.2
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 6.9e-45 184.5 161 57.1
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 2.6e-44 182.6 138 60.1
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.3e-43 180.3 158 55.7
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.7e-43 179.9 137 63.5
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 3.8e-43 178.7 170 53.5
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.4e-42 176.8 155 55.5
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 5.5e-42 174.9 134 58.2
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 5.5e-42 174.9 153 54.9
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.6e-41 173.3 162 50.0
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 3.6e-41 172.2 152 53.9
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 8.8e-40 167.5 145 53.1
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.5e-39 166.8 138 60.9
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 9.7e-39 164.1 148 51.4
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.3e-38 163.7 156 50.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.1e-37 160.6 174 50.6
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 2.4e-37 159.5 140 52.1
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 2.4e-37 159.5 140 52.1
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 6.9e-37 157.9 135 58.5
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 9.1e-37 157.5 177 46.3
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.0e-36 156.4 106 66.0
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 3.8e-35 152.1 107 62.6
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 8.5e-35 151.0 160 49.4
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 3.9e-32 142.1 93 73.1
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 2.6e-31 139.4 160 50.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.7e-30 136.7 115 53.9
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.8e-27 125.6 112 51.8
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 3.8e-27 125.6 84 65.5
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 9.4e-26 120.9 128 42.2
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 8.0e-25 117.9 199 36.7
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 8.8e-24 114.4 199 35.7
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.5e-23 113.6 131 41.2
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 5.7e-23 111.7 75 66.7
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 7.5e-23 111.3 145 37.9
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.1e-21 107.5 85 57.6
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 4.7e-17 92.0 158 36.1
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 2.0e-15 86.7 69 63.8
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 5.7e-15 85.1 135 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 3.5e-12 75.9 109 34.9
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.1e-10 70.9 85 45.9
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 1.6e-09 67.0 78 44.9
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 2.1e-09 66.6 128 35.9
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 1.5e-07 60.5 133 27.8
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 3.4e-07 59.3 54 50.0
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 4.4e-07 58.9 36 72.2
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 5.7e-07 58.5 32 75.0
Cfa005130 Carpinus fangiana HOM05D000013 ORTHO05D000011 8.3e-06 54.7 32 68.8


User provided reference genes

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