Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-150 536.6 263 100.0
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.5e-112 409.8 223 89.2
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.0e-108 397.1 261 77.0
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 9.1e-105 384.0 256 75.8
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 2.0e-104 382.9 258 74.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 5.9e-104 381.3 256 75.4
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.1e-102 377.1 260 71.5
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 3.2e-102 375.6 228 78.1
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 7.9e-101 370.9 233 77.7
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.4e-100 370.2 233 77.7
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.4e-99 365.2 228 76.8
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.1e-97 360.5 227 77.5
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.4e-97 359.4 236 74.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 3.1e-97 359.0 232 73.7
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 6.9e-97 357.8 222 77.5
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 2.0e-96 356.3 241 71.4
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.5e-96 355.1 244 71.7
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.0e-95 354.0 236 73.3
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.3e-95 353.6 253 69.2
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.3e-95 353.6 260 66.9
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.2e-95 352.8 261 66.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.8e-95 352.1 260 66.9
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.4e-94 350.1 247 69.2
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.9e-94 349.7 232 71.1
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 4.2e-94 348.6 227 72.2
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.2e-93 347.1 227 74.0
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.6e-93 346.7 228 71.5
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.6e-93 346.7 260 64.2
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 3.6e-93 345.5 224 72.3
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.6e-93 345.5 229 72.9
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.6e-93 345.5 229 72.9
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 7.9e-93 344.4 262 65.6
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 7.9e-93 344.4 254 67.7
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.3e-92 342.8 240 69.6
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.3e-92 342.8 229 72.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 8.8e-92 340.9 224 73.2
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.1e-91 340.5 227 71.4
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.6e-91 339.3 228 71.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 3.3e-91 339.0 221 71.9
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 7.4e-91 337.8 236 68.6
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 9.7e-91 337.4 259 64.1
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.2e-90 336.3 223 71.3
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.8e-90 335.1 224 72.8
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.8e-89 333.2 224 71.9
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 2.4e-89 332.8 225 69.8
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 7.0e-89 331.3 256 64.5
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 9.1e-89 330.9 226 69.5
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 2.6e-88 329.3 260 61.2
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.5e-88 328.6 224 71.0
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.5e-88 328.6 240 66.7
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 4.5e-88 328.6 256 60.9
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.9e-88 328.2 265 60.4
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 7.7e-88 327.8 228 71.1
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.7e-87 326.6 240 64.6
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 3.8e-87 325.5 225 69.3
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.0e-87 325.1 248 64.5
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.0e-87 325.1 248 64.5
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 8.5e-87 324.3 225 69.8
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 8.5e-87 324.3 236 64.0
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 5.5e-86 321.6 229 67.2
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 5.5e-86 321.6 250 64.4
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 7.2e-86 321.2 256 61.3
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 7.2e-86 321.2 237 67.1
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 9.4e-86 320.9 225 68.9
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.2e-85 320.5 223 71.3
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.6e-85 320.1 236 64.4
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.1e-85 319.7 236 63.6
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 3.6e-85 318.9 261 61.3
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 3.6e-85 318.9 229 66.8
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 3.6e-85 318.9 257 61.5
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 6.1e-85 318.2 225 68.4
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.0e-84 317.4 236 64.0
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.4e-84 317.0 230 66.5
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.8e-84 316.6 223 70.4
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.0e-84 315.5 233 64.4
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 4.0e-84 315.5 229 65.1
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.2e-84 315.1 254 61.0
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 5.2e-84 315.1 229 65.5
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.2e-83 313.9 227 67.4
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 1.5e-83 313.5 222 67.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 1.5e-83 313.5 225 66.7
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.6e-83 312.8 234 65.0
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.6e-83 312.8 230 65.7
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.6e-83 312.8 230 65.7
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 9.7e-83 310.8 226 66.4
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.7e-82 310.1 221 67.9
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.7e-82 310.1 249 63.9
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.8e-82 309.3 221 67.4
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 6.3e-82 308.1 215 68.8
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 6.3e-82 308.1 221 68.3
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.8e-81 306.6 230 65.2
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.8e-81 306.6 230 65.2
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.8e-81 306.6 230 65.2
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 3.1e-81 305.8 222 66.2
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 5.3e-81 305.1 185 77.3
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 9.1e-81 304.3 221 66.5
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.7e-80 302.8 239 64.0
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 3.5e-80 302.4 245 63.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 6.5e-79 298.1 228 62.7
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 1.1e-78 297.4 323 50.8
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.6e-75 286.2 259 54.8
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.1e-69 266.5 208 60.6
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 4.7e-69 265.4 208 58.7
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.5e-67 260.4 432 37.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.8e-66 256.1 198 64.6
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 5.0e-63 245.4 124 96.0
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 3.3e-62 242.7 210 57.1
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.1e-54 217.6 214 51.9
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.6e-51 206.5 210 49.5
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.9e-49 200.3 131 71.0
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.2e-48 197.6 163 60.1
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.4e-43 179.5 99 86.9
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 4.9e-42 175.6 117 67.5
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.9e-38 163.7 113 68.1
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 7.3e-38 161.8 107 70.1
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 3.6e-37 159.5 115 69.6
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.1e-36 156.4 106 68.9
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 4.0e-36 156.0 116 69.0
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 5.4e-33 145.6 134 56.0
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.7e-26 124.0 258 31.0
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 6.0e-24 115.5 82 64.6
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.0e-23 113.2 103 61.2
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 9.0e-12 75.1 67 55.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 9.0e-12 75.1 67 55.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 7.9e-08 62.0 81 42.0
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 1.0e-07 61.6 88 35.2
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 5.6e-06 55.8 47 55.3


User provided reference genes

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