Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.0e-27 125.6 91 100.0
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.4e-17 92.8 89 73.0
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.2e-17 91.7 89 71.9
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.4e-15 86.3 90 73.3
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.9e-14 82.4 87 71.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 4.3e-14 81.3 89 60.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 5.7e-14 80.9 90 63.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 7.4e-14 80.5 86 70.9
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 9.7e-14 80.1 89 69.7
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 9.7e-14 80.1 87 74.7
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.7e-13 79.3 89 61.8
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 2.8e-13 78.6 90 54.4
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 3.7e-13 78.2 83 61.4
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.4e-12 76.3 89 70.8
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.4e-12 75.5 88 64.8
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.1e-12 75.1 90 58.9
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 4.1e-12 74.7 90 63.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.3e-12 74.3 90 67.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 5.3e-12 74.3 85 69.4
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 9.1e-12 73.6 87 60.9
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.5e-11 72.8 86 64.0
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.5e-11 72.8 86 67.4
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.6e-11 72.0 82 64.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.4e-11 71.6 87 59.8
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 5.9e-11 70.9 86 72.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.3e-10 69.7 86 58.1
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 2.9e-10 68.6 87 57.5
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 2.9e-10 68.6 90 63.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 3.8e-10 68.2 86 51.2
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.8e-10 68.2 89 65.2
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 5.0e-10 67.8 92 57.6
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 5.0e-10 67.8 86 59.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.1e-09 66.6 86 61.6
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.1e-09 66.6 104 42.3
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.4e-09 66.2 86 55.8
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.4e-09 66.2 84 56.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.9e-09 65.9 88 63.6
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.5e-09 64.3 86 57.0
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 7.2e-09 63.9 89 51.7
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.2e-08 63.2 89 55.1
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.1e-08 62.4 86 51.2
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 2.7e-08 62.0 85 58.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.7e-08 62.0 87 43.7
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 7.9e-08 60.5 85 49.4
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.8e-07 59.3 83 54.2
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.8e-07 59.3 85 55.3
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.3e-07 58.9 89 53.9
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 2.3e-07 58.9 87 67.8
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.3e-07 58.9 45 60.0
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.0e-07 58.5 86 54.7
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 3.9e-07 58.2 81 44.4
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.1e-07 57.8 86 53.5
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.1e-07 57.8 84 57.1
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 6.7e-07 57.4 86 38.4
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.1e-06 56.6 88 53.4
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.5e-06 56.2 88 36.4
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.5e-06 56.2 88 36.4
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 2.0e-06 55.8 45 55.6
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.6e-06 55.5 86 44.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.6e-06 55.5 86 44.2
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 3.3e-06 55.1 83 59.0
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.4e-06 54.7 87 50.6
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 5.7e-06 54.3 89 48.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 7.4e-06 53.9 90 35.6
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 7.4e-06 53.9 47 57.4


User provided reference genes

Program Settings