Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.0e-279 964.5 493 100.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.0e-278 961.8 493 99.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.9e-120 436.4 505 55.8
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 4.5e-105 386.0 492 51.8
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 2.5e-100 370.2 492 49.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.1e-99 367.1 490 49.2
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 9.0e-98 361.7 485 48.9
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.9e-93 346.3 489 47.6
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 8.7e-93 345.1 492 46.5
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.5e-92 344.4 487 47.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 7.4e-92 342.0 485 46.4
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 7.4e-92 342.0 485 46.8
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.2e-91 340.5 483 46.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.2e-91 340.5 484 46.1
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.3e-91 339.0 485 46.2
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 6.3e-91 339.0 486 45.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.2e-91 338.6 488 45.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.2e-91 338.6 488 45.5
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.4e-90 337.0 488 45.5
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 3.1e-90 336.7 502 45.8
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.1e-90 336.7 485 44.7
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.1e-90 336.3 514 45.1
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.3e-90 335.9 486 45.3
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 9.0e-90 335.1 485 45.6
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.2e-89 334.7 489 45.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.0e-89 334.0 489 45.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.0e-89 334.0 488 45.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.6e-89 333.6 485 45.8
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.6e-89 333.6 486 45.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.6e-89 333.6 486 45.7
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.4e-89 333.2 484 45.9
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 5.9e-89 332.4 483 45.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 5.9e-89 332.4 486 45.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 5.9e-89 332.4 486 44.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 5.9e-89 332.4 490 46.3
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.9e-89 332.4 483 45.1
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.7e-88 330.9 484 44.6
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.7e-88 330.9 486 44.2
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.7e-88 330.9 488 44.9
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.9e-88 330.1 488 44.5
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 3.8e-88 329.7 484 44.2
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 5.0e-88 329.3 486 44.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 6.5e-88 328.9 485 45.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.5e-87 325.9 495 44.4
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 9.4e-87 325.1 488 44.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 9.4e-87 325.1 484 46.1
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.7e-86 323.6 486 45.1
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.6e-86 323.2 485 44.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 4.6e-86 322.8 483 43.7
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 7.9e-86 322.0 486 44.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 7.9e-86 322.0 484 44.4
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 7.9e-86 322.0 488 44.7
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.0e-85 321.6 485 44.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 5.1e-85 319.3 488 44.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 6.7e-85 318.9 490 43.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.1e-84 318.2 487 43.7
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.0e-84 317.4 484 42.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.0e-84 317.4 484 43.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 3.3e-84 316.6 490 43.5
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 5.7e-84 315.8 484 44.2
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 5.7e-84 315.8 484 43.6
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.4e-84 315.5 485 43.7
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 7.4e-84 315.5 490 43.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.3e-83 314.7 486 43.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.3e-83 314.7 490 43.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-83 314.3 489 43.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.8e-83 312.8 484 44.0
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 4.8e-83 312.8 488 43.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 6.3e-83 312.4 488 43.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 6.3e-83 312.4 488 43.0
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 8.2e-83 312.0 485 43.7
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.2e-83 312.0 488 43.2
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.1e-82 311.6 488 43.6
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.1e-82 311.6 485 43.1
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.4e-82 311.2 484 43.4
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.8e-82 310.8 489 42.7
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.1e-82 310.1 483 44.1
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.1e-82 309.7 489 42.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.9e-82 308.9 485 42.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 6.9e-82 308.9 484 42.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.2e-81 308.1 485 42.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.4e-81 306.6 485 43.1
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 3.4e-81 306.6 483 43.5
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 7.7e-81 305.4 485 43.3
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.7e-80 304.3 483 43.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.9e-80 303.5 484 42.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.9e-77 293.1 488 42.2
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 6.7e-77 292.4 486 41.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-76 291.6 486 41.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.1e-76 291.6 488 41.0
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.5e-76 291.2 486 41.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-76 291.2 486 41.4
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-76 290.8 486 41.4
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-76 290.4 486 41.2
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-76 290.4 486 41.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 5.7e-76 289.3 486 41.2
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.7e-76 289.3 487 41.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 7.4e-76 288.9 486 41.2
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.4e-76 288.9 487 41.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-75 288.1 486 41.2
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.7e-75 287.7 467 42.2
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.1e-74 285.0 486 40.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-74 284.6 483 40.6
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.0e-73 280.8 479 39.9
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-73 280.4 483 40.6
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-73 280.4 483 40.6
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-73 280.4 483 40.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 7.7e-73 278.9 177 80.8
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-72 278.1 487 40.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-72 278.1 478 40.4
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.8e-72 276.6 461 42.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.0e-72 276.2 485 39.4
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.9e-71 274.2 485 39.4
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 9.4e-71 271.9 487 38.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.6e-70 270.0 479 38.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 4.4e-68 263.1 497 38.2
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-67 261.5 484 37.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.8e-64 250.0 477 36.7
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.0e-61 240.4 189 66.7
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-59 235.0 146 78.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 4.8e-59 233.0 140 82.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 5.3e-58 229.6 429 40.6
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-57 228.0 187 62.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-55 220.3 173 65.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 5.5e-55 219.5 135 80.7
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 9.4e-55 218.8 173 65.3
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.1e-54 217.6 190 61.6
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.6e-54 216.9 175 64.0
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 4.7e-54 216.5 477 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.8e-53 214.5 477 32.7
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 6.8e-53 212.6 173 64.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.8e-53 212.6 148 79.7
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 2.0e-52 211.1 180 58.9
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 5.7e-52 209.5 131 80.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-51 208.4 145 73.8
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-51 205.7 144 72.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-50 205.3 166 65.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-50 204.9 162 67.3
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 5.0e-48 196.4 159 60.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 8.6e-48 195.7 196 54.1
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.3e-47 193.7 135 76.3
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.0e-45 188.7 494 33.2
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 8.9e-45 185.7 138 68.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.9e-45 185.7 131 73.3
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.2e-44 185.3 471 33.8
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-44 183.3 164 62.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-43 181.8 164 64.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-42 177.9 147 63.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-42 177.6 110 80.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-42 177.6 159 61.0
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-41 174.1 143 62.2
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 7.8e-41 172.6 183 51.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 4.3e-39 166.8 173 56.6
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 4.3e-39 166.8 162 57.4
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.8e-38 164.1 96 85.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.0e-37 160.2 131 63.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-35 154.5 121 67.8
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 9.2e-34 149.1 153 51.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.0e-32 144.1 124 61.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.1e-22 111.3 73 80.8
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.7e-19 101.7 184 34.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-17 95.5 58 75.9
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.6e-17 95.1 71 71.8
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.7e-17 94.4 156 37.2
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 7.8e-17 92.8 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-16 92.4 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-16 92.4 52 86.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-16 91.3 52 86.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.9e-16 90.5 74 60.8
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.9e-16 90.5 59 76.3
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-16 90.1 52 86.5
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 5.1e-16 90.1 65 67.7
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 6.6e-16 89.7 69 59.4
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.9e-15 88.2 53 79.2
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 3.3e-15 87.4 66 66.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 5.6e-15 86.7 50 84.0
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 6.2e-14 83.2 80 53.8
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.4e-13 81.3 176 29.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-12 78.2 66 59.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.0e-12 78.2 66 59.1
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-11 75.5 66 56.1
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.2e-11 74.7 66 56.1
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 6.4e-11 73.2 54 66.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.3e-07 60.8 40 75.0


User provided reference genes

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