Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0215800 Rhododendron simsii HOM05D000093 ORTHO05D000162 6.7e-78 293.9 142 100.0
Rhsim08G0078200 Rhododendron simsii HOM05D000065 ORTHO05D000162 2.2e-33 146.0 81 90.1
Rhsim11G0196700 Rhododendron simsii HOM05D000093 ORTHO05D000835 2.3e-17 92.8 45 95.6
RhsimUnG0098000 Rhododendron simsii HOM05D000093 ORTHO05D000835 2.3e-17 92.8 45 95.6
RhsimUnG0171200 Rhododendron simsii HOM05D000093 ORTHO05D000835 2.3e-17 92.8 45 95.6
RhsimUnG0215600 Rhododendron simsii HOM05D000093 ORTHO05D000835 2.3e-17 92.8 45 95.6
vmacro01550 Vaccinium macrocarpon HOM05D000093 ORTHO05D000835 1.1e-16 90.5 46 91.3
vmacro02326 Vaccinium macrocarpon HOM05D000093 ORTHO05D000835 1.9e-16 89.7 45 93.3
Actinidia18008 Actinidia chinensis HOM05D000093 ORTHO05D000835 3.7e-12 75.5 45 77.8
Potri.004G183800 Populus trichocarpa HOM05D000093 ORTHO05D000835 3.8e-09 65.5 46 58.7
Dinv41885 Davidia involucrata HOM05D000093 ORTHO05D000835 1.1e-08 63.9 117 35.9
TAR381G1469 Trochodendron aralioides HOM05D000093 ORTHO05D000835 1.5e-08 63.5 45 60.0
QL11p053432 Quercus lobata HOM05D000093 ORTHO05D000835 3.3e-08 62.4 45 60.0
CiPaw.05G088900 Carya illinoinensis HOM05D000093 ORTHO05D000835 4.3e-08 62.0 85 40.0
Sabra09G0048200 Salix brachista HOM05D000093 ORTHO05D000835 4.3e-08 62.0 46 56.5
TAR381G0261 Trochodendron aralioides HOM05D000093 ORTHO05D000835 4.3e-08 62.0 45 57.8
CSS0036278 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D000835 5.6e-08 61.6 44 61.4
Potri.002G010466 Populus trichocarpa HOM05D000093 ORTHO05D000835 5.6e-08 61.6 45 57.8
CSS0047380 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D000835 7.3e-08 61.2 44 61.4
QL02p014101 Quercus lobata HOM05D000093 ORTHO05D000835 7.3e-08 61.2 45 53.3
Potri.001G270400 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Potri.001G270404 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Potri.001G270500 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Potri.001G270600 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Potri.009G143600 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Sabra09G0048100 Salix brachista HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Sabra16G0165800 Salix brachista HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
Sabra16G0166000 Salix brachista HOM05D000093 ORTHO05D000835 1.2e-07 60.5 46 54.3
TAR633G2350 Trochodendron aralioides HOM05D000093 ORTHO05D000835 1.2e-07 60.5 45 55.6
AUR62027132 Chenopodium quinoa HOM05D000093 ORTHO05D000835 1.6e-07 60.1 43 58.1
Manes.05G134000 Manihot esculenta HOM05D000093 ORTHO05D000835 1.6e-07 60.1 84 40.5
Potri.009G064800 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.6e-07 60.1 46 54.3
RcHm_v2.0_Chr6g0280481 Rosa chinensis HOM05D000093 ORTHO05D000835 2.1e-07 59.7 45 57.8
RcHm_v2.0_Chr6g0280521 Rosa chinensis HOM05D000093 ORTHO05D000835 2.1e-07 59.7 45 57.8
Sabra01G0082400 Salix brachista HOM05D000093 ORTHO05D000835 2.1e-07 59.7 43 55.8
Manes.02G174900 Manihot esculenta HOM05D000093 ORTHO05D000835 2.8e-07 59.3 45 55.6
QL02p014132 Quercus lobata HOM05D000093 ORTHO05D000835 2.8e-07 59.3 43 51.2
TAR381G0901 Trochodendron aralioides HOM05D000093 ORTHO05D000835 2.8e-07 59.3 43 55.8
Actinidia20562 Actinidia chinensis HOM05D000093 ORTHO05D054514 3.6e-07 58.9 34 76.5
CsaV3_3G003570 Cucumis sativus L. HOM05D000093 ORTHO05D000835 3.6e-07 58.9 76 38.2
Gohir.A12G225500 Gossypium hirsutum HOM05D000093 ORTHO05D000835 3.6e-07 58.9 43 53.5
Gohir.D12G228100 Gossypium hirsutum HOM05D000093 ORTHO05D000835 3.6e-07 58.9 43 53.5
Gorai.008G244100 Gossypium raimondii HOM05D000093 ORTHO05D000835 3.6e-07 58.9 43 53.5
Lj1C621G0 Lonicera japonica HOM05D000093 ORTHO05D000835 3.6e-07 58.9 55 45.5
QL11p053398 Quercus lobata HOM05D000093 ORTHO05D000835 3.6e-07 58.9 45 55.6
Sabra16G0165900 Salix brachista HOM05D000093 ORTHO05D000835 3.6e-07 58.9 46 52.2
Actinidia12023 Actinidia chinensis HOM05D000093 ORTHO05D000835 4.7e-07 58.5 46 52.2
Potri.003G122500 Populus trichocarpa HOM05D000093 ORTHO05D000835 4.7e-07 58.5 43 53.5
PGR119G0298 Punica granatum HOM05D000093 ORTHO05D000835 4.7e-07 58.5 46 56.5
QL05p022318 Quercus lobata HOM05D000093 ORTHO05D000835 4.7e-07 58.5 45 51.1
Cfa014079 Carpinus fangiana HOM05D000093 ORTHO05D000835 6.1e-07 58.2 43 51.2
CiPaw.06G118000 Carya illinoinensis HOM05D000093 ORTHO05D000835 6.1e-07 58.2 45 53.3
ClCG00G000310 Citrullus lanatus HOM05D000093 ORTHO05D000835 6.1e-07 58.2 43 53.5
ClCG00G001750 Citrullus lanatus HOM05D000093 ORTHO05D000835 6.1e-07 58.2 43 53.5
ClCG10G003570 Citrullus lanatus HOM05D000093 ORTHO05D000835 6.1e-07 58.2 43 53.5
Prupe.8G177300 Prunus persica HOM05D000093 ORTHO05D000835 6.1e-07 58.2 62 46.8
GSVIVG01013355001 Vitis vinifera HOM05D000093 ORTHO05D000835 6.1e-07 58.2 46 54.3
Cc05_g00530 Coffea canephora HOM05D000093 ORTHO05D000835 8.0e-07 57.8 43 58.1
FvH4_2g16500 Fragaria vesca HOM05D000093 ORTHO05D000835 8.0e-07 57.8 45 53.3
FAN24G2422 Fragaria x ananassa HOM05D000093 ORTHO05D000835 8.0e-07 57.8 45 53.3
FAN27G0007 Fragaria x ananassa HOM05D000093 ORTHO05D000835 8.0e-07 57.8 45 53.3
Hma1.2p1_0648F.1_g195080 Hydrangea macrophylla HOM05D000093 ORTHO05D000835 8.0e-07 57.8 43 53.5
PSO675G5217 Papaver somniferum HOM05D000093 ORTHO05D000835 8.0e-07 57.8 46 54.3
Sabra16G0165600 Salix brachista HOM05D000093 ORTHO05D000835 8.0e-07 57.8 46 52.2
Sed0006334 Sechium edule HOM05D000093 ORTHO05D000835 8.0e-07 57.8 43 53.5
TAR210G0003 Trochodendron aralioides HOM05D000093 ORTHO05D000835 8.0e-07 57.8 43 55.8
Atru.chr9.1550 Acer truncatum HOM05D000093 ORTHO05D000835 1.0e-06 57.4 43 51.2
Actinidia05224 Actinidia chinensis HOM05D000093 ORTHO05D000835 1.4e-06 57.0 43 53.5
Actinidia27404 Actinidia chinensis HOM05D000093 ORTHO05D000835 1.4e-06 57.0 43 55.8
CiPaw.06G117900 Carya illinoinensis HOM05D000093 ORTHO05D000835 1.4e-06 57.0 45 53.3
MELO3C014027.2 Cucumis melo HOM05D000093 ORTHO05D000835 1.4e-06 57.0 76 36.8
Potri.001G270300 Populus trichocarpa HOM05D000093 ORTHO05D000835 1.4e-06 57.0 46 52.2
Sabra16G0166200 Salix brachista HOM05D000093 ORTHO05D000835 1.4e-06 57.0 66 45.5
TAR628G1465 Trochodendron aralioides HOM05D000093 ORTHO05D000835 1.4e-06 57.0 45 48.9
GSVIVG01010605001 Vitis vinifera HOM05D000093 ORTHO05D000835 1.4e-06 57.0 56 44.6
Ah.12g057570 Amaranthus hybridus HOM05D000093 ORTHO05D000835 1.8e-06 56.6 43 53.5
arahy.Tifrunner.gnm1.ann1.A1DKIN Arachis hypogaea HOM05D000093 ORTHO05D000835 1.8e-06 56.6 43 51.2
CiPaw.02G025800 Carya illinoinensis HOM05D000093 ORTHO05D000835 1.8e-06 56.6 45 51.1
CiPaw.08G073100 Carya illinoinensis HOM05D000093 ORTHO05D000835 1.8e-06 56.6 45 51.1
CiPaw.08G073200 Carya illinoinensis HOM05D000093 ORTHO05D000835 1.8e-06 56.6 45 51.1
CiPaw.08G073300 Carya illinoinensis HOM05D000093 ORTHO05D000835 1.8e-06 56.6 45 51.1
MD10G1138400 Malus domestica HOM05D000093 ORTHO05D000835 1.8e-06 56.6 45 53.3
AUR62010642 Chenopodium quinoa HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 51.2
AUR62012934 Chenopodium quinoa HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 55.8
AUR62017285 Chenopodium quinoa HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 51.2
Haze_22780 Corylus avellana HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 48.8
Haze_22781 Corylus avellana HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 48.8
Dinv12120 Davidia involucrata HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 53.5
Dinv16608 Davidia involucrata HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 53.5
Dinv39806 Davidia involucrata HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 53.5
Gohir.A03G017240 Gossypium hirsutum HOM05D000093 ORTHO05D000835 2.3e-06 56.2 43 51.2
Potri.009G064900 Populus trichocarpa HOM05D000093 ORTHO05D000835 2.3e-06 56.2 98 36.7
QL11p054026 Quercus lobata HOM05D000093 ORTHO05D000835 2.3e-06 56.2 45 60.0
Migut.E01289 Erythranthe guttata HOM05D000093 ORTHO05D000835 3.0e-06 55.8 43 53.5
FAN24G1507 Fragaria x ananassa HOM05D000093 ORTHO05D000835 3.0e-06 55.8 45 51.1
Hma1.2p1_0075F.1_g039130 Hydrangea macrophylla HOM05D000093 ORTHO05D000835 3.0e-06 55.8 40 60.0
Hma1.2p1_0912F.1_g235920 Hydrangea macrophylla HOM05D000093 ORTHO05D000835 3.0e-06 55.8 40 60.0
Nitab4.5_0002234g0030 Nicotiana tabacum HOM05D000093 ORTHO05D000835 3.0e-06 55.8 43 51.2
Nitab4.5_0002853g0060 Nicotiana tabacum HOM05D000093 ORTHO05D000835 3.0e-06 55.8 43 51.2
THA.LOC104818132 Tarenaya hassleriana HOM05D000093 ORTHO05D000835 3.0e-06 55.8 43 53.5
GSVIVG01010606001 Vitis vinifera HOM05D000093 ORTHO05D000835 3.0e-06 55.8 46 50.0
GSVIVG01013354001 Vitis vinifera HOM05D000093 ORTHO05D000835 3.0e-06 55.8 46 50.0
CAN.G981.22 Capsicum annuum HOM05D000093 ORTHO05D000835 4.0e-06 55.5 43 51.2
CiPaw.11G140400 Carya illinoinensis HOM05D000093 ORTHO05D000835 4.0e-06 55.5 43 48.8
PSO210G4367 Papaver somniferum HOM05D000093 ORTHO05D000835 4.0e-06 55.5 46 54.3
RcHm_v2.0_Chr6g0280441 Rosa chinensis HOM05D000093 ORTHO05D000835 4.0e-06 55.5 45 51.1
Sabra16G0166100 Salix brachista HOM05D000093 ORTHO05D000835 4.0e-06 55.5 80 37.5
THA.LOC104818122 Tarenaya hassleriana HOM05D000093 ORTHO05D000835 4.0e-06 55.5 43 53.5
TAR375G0170 Trochodendron aralioides HOM05D000093 ORTHO05D000835 4.0e-06 55.5 46 47.8
CANSAT21G1091 Cannabis sativa HOM05D000093 ORTHO05D000835 5.2e-06 55.1 43 51.2
Duzib093G1021 Durio zibethinus HOM05D000093 ORTHO05D000835 5.2e-06 55.1 43 53.5
Potri.001G109100 Populus trichocarpa HOM05D000093 ORTHO05D000835 5.2e-06 55.1 43 51.2
Potri.001G270800 Populus trichocarpa HOM05D000093 ORTHO05D000835 5.2e-06 55.1 98 36.7
GSVIVG01003835001 Vitis vinifera HOM05D000093 ORTHO05D000835 5.2e-06 55.1 50 48.0
DCAR_023685 Daucus carota HOM05D000093 ORTHO05D000835 6.8e-06 54.7 43 58.1
Migut.F00804 Erythranthe guttata HOM05D000093 ORTHO05D000835 6.8e-06 54.7 43 53.5
SalBow1G2688 Salvia bowleyana HOM05D000093 ORTHO05D000835 6.8e-06 54.7 43 53.5
arahy.Tifrunner.gnm1.ann1.08MLA9 Arachis hypogaea HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 48.8
arahy.Tifrunner.gnm1.ann1.4MZP26 Arachis hypogaea HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 48.8
COL.COLO4_05262 Corchorus olitorius HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 48.8
Eucgr.F00491 Eucalyptus grandis HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 55.8
Eucgr.G03307 Eucalyptus grandis HOM05D000093 ORTHO05D000835 8.9e-06 54.3 45 51.1
Lsat_1_v5_gn_0_420 Lactuca sativa HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 55.8
Lj2C41T1 Lonicera japonica HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 55.8
Peaxi162Scf00714g00428 Petunia axillaris HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 48.8
SGA_v2.0_scaffold286G47088 Striga asiatica HOM05D000093 ORTHO05D000835 8.9e-06 54.3 43 51.2


User provided reference genes

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