Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.3e-255 885.9 477 100.0
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.8e-181 639.0 584 66.8
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.7e-176 621.7 485 73.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.0e-174 616.3 482 73.7
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.4e-158 562.4 478 69.5
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.7e-155 552.7 482 68.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 4.6e-155 552.0 478 67.4
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.3e-145 519.2 489 64.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.5e-142 510.4 480 64.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.0e-142 510.0 452 65.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 4.4e-142 508.8 463 61.8
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 5.8e-142 508.4 432 67.1
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.7e-141 506.9 481 64.0
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.7e-141 506.9 490 62.7
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.2e-141 506.5 481 63.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.2e-141 506.5 485 63.9
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 9.2e-140 501.1 486 62.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-139 500.4 486 62.8
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.5e-139 499.2 489 62.8
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 8.6e-138 494.6 481 63.0
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 5.6e-137 491.9 477 62.1
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 9.5e-137 491.1 484 63.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.4e-135 487.3 479 62.4
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 6.8e-135 485.0 487 60.4
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.5e-134 483.8 481 61.7
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.4e-134 482.6 491 61.1
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.9e-133 479.6 471 63.1
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 8.4e-133 478.0 469 62.5
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.1e-132 477.6 490 60.0
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.1e-132 474.9 497 62.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.6e-131 473.8 477 60.8
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.6e-131 472.2 469 60.6
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.9e-130 469.2 465 61.3
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 8.6e-130 468.0 483 61.3
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.3e-129 464.9 473 59.4
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.6e-128 462.6 491 57.2
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.6e-128 462.6 485 59.4
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.2e-126 457.6 492 59.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.0e-126 456.8 494 57.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 6.4e-125 451.8 455 62.2
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.4e-124 450.7 482 58.3
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 9.3e-124 448.0 474 57.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-123 447.2 477 57.4
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.1e-123 446.8 355 74.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.1e-123 446.8 472 57.4
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.6e-123 445.7 477 57.2
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 6.0e-123 445.3 435 59.1
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 6.0e-123 445.3 479 59.1
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.0e-123 445.3 474 58.6
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.0e-122 444.5 491 57.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-122 444.1 493 58.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.3e-122 444.1 474 58.4
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.1e-122 442.2 477 57.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.6e-122 441.8 493 58.6
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.6e-122 441.8 480 57.9
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-121 440.3 490 58.2
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.6e-121 438.7 472 57.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.6e-120 436.0 422 63.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.8e-120 435.6 480 56.9
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 6.2e-120 435.3 491 56.4
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 8.1e-120 434.9 482 57.1
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.6e-118 429.9 481 57.0
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.5e-118 429.1 494 54.9
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.1e-116 424.5 498 56.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 5.4e-116 422.2 483 55.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 2.7e-115 419.9 481 54.3
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.0e-114 417.9 481 54.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-114 417.5 580 51.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.3e-114 416.8 473 54.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 8.7e-114 414.8 485 55.3
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.9e-113 413.7 471 56.7
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 2.5e-113 413.3 484 55.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.5e-113 413.3 477 55.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-112 410.2 424 56.4
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.1e-112 410.2 489 56.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.1e-111 407.9 472 56.8
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.1e-111 406.4 501 52.9
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 3.1e-111 406.4 496 55.6
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 4.0e-111 406.0 484 54.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 5.3e-111 405.6 534 50.7
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.2e-110 404.4 422 56.4
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.6e-110 403.3 484 53.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.6e-110 403.3 494 54.7
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.9e-109 399.1 476 55.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 8.4e-109 398.3 514 50.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 3.5e-107 392.9 480 52.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.0e-106 391.3 489 51.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.8e-106 390.6 486 51.0
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.0e-106 389.8 379 60.4
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.7e-106 388.3 492 51.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.5e-105 387.5 493 51.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.6e-105 384.8 338 66.0
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.3e-104 384.4 476 51.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 2.8e-104 383.3 503 50.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.7e-104 382.9 526 49.0
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 3.4e-102 376.3 482 52.3
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.8e-102 375.6 482 51.0
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.0e-101 374.8 464 53.2
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.1e-99 367.1 512 47.9
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 2.1e-99 367.1 488 51.2
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-98 364.4 521 47.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.8e-98 364.0 486 50.0
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.7e-98 362.1 460 52.2
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.1e-95 354.8 434 51.4
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.5e-94 349.4 460 50.7
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.0e-93 348.2 483 48.7
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 9.3e-92 341.7 477 49.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.5e-89 333.6 246 75.6
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 4.8e-88 329.3 459 47.7
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 6.3e-88 328.9 555 44.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.9e-86 322.4 464 48.7
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.7e-86 322.0 445 48.8
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.9e-84 317.4 329 60.8
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 3.2e-84 316.6 267 69.3
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.6e-83 312.8 435 46.7
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 9.7e-81 305.1 435 48.0
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.4e-79 301.2 445 45.4
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 2.0e-78 297.4 357 51.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-77 294.7 390 48.7
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.7e-77 294.3 459 44.7
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.0e-74 285.0 432 45.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 3.0e-74 283.5 466 41.6
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.0e-73 280.8 287 60.3
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.1e-71 273.1 433 43.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 5.3e-63 246.1 478 38.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 6.5e-61 239.2 399 44.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.8e-51 207.2 267 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 9.8e-49 198.7 410 35.4
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.3e-45 187.6 471 33.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.8e-42 176.0 281 44.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.7e-35 153.3 295 43.1
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 7.5e-33 146.0 398 31.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 3.7e-32 143.7 189 50.8
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 3.3e-28 130.6 94 70.2
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 8.1e-27 125.9 466 28.1
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.1e-27 125.9 100 65.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.9e-23 114.8 175 41.7
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.4e-23 114.4 67 77.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.6e-22 111.7 311 31.8
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.0e-21 109.0 195 42.6
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 6.6e-21 106.3 75 66.7
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.8e-19 100.9 186 41.9
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 8.9e-18 95.9 166 44.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.2e-17 95.5 402 25.9
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 3.8e-16 90.5 184 36.4
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.4e-15 87.8 155 39.4
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 2.1e-14 84.7 195 38.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.0e-13 80.9 138 40.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 7.3e-12 76.3 314 27.7
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 2.8e-11 74.3 237 34.6
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.6e-11 73.9 194 33.0
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.4e-10 72.0 80 53.8
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 2.4e-10 71.2 322 26.1
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.0e-09 68.2 151 40.4
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.3e-08 65.5 70 48.6
Potri.001G030401 Populus trichocarpa HOM05D028338 ORTHO05D050529 2.2e-08 64.7 276 24.6
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.2e-08 64.7 107 35.5
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 2.7e-06 57.8 65 53.8
Sabra01G0021900 Salix brachista HOM05D028338 ORTHO05D050529 7.8e-06 56.2 270 25.2


User provided reference genes

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