Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.0e-149 534.3 495 100.0
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 7.3e-55 219.2 334 41.6
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 1.2e-52 211.8 312 72.1
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.5e-52 211.5 312 72.1
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.6e-52 210.7 104 96.2
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.6e-52 210.7 104 96.2
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.3e-51 208.4 327 62.7
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 5.4e-50 203.0 311 88.1
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 7.0e-50 202.6 319 71.2
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 7.0e-50 202.6 312 62.8
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.2e-49 201.8 312 66.3
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 2.7e-49 200.7 312 65.1
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 2.7e-49 200.7 319 38.9
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.7e-49 200.7 312 88.8
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 3.5e-49 200.3 316 88.0
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.5e-49 200.3 312 63.5
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 4.6e-49 199.9 312 61.5
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 4.6e-49 199.9 311 68.8
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 4.6e-49 199.9 312 88.5
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 6.0e-49 199.5 311 76.8
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 6.0e-49 199.5 313 69.6
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.0e-48 198.7 312 62.2
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 1.3e-48 198.4 333 67.6
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 2.3e-48 197.6 312 64.7
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.0e-48 197.2 322 50.6
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.0e-48 197.2 313 69.0
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 3.9e-48 196.8 316 61.4
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 3.9e-48 196.8 367 37.1
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 5.0e-48 196.4 309 70.2
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 6.6e-48 196.1 310 48.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 6.6e-48 196.1 313 70.9
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 1.1e-47 195.3 312 68.6
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.1e-47 195.3 328 36.6
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.5e-47 194.9 309 86.7
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 2.5e-47 194.1 312 70.5
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 3.3e-47 193.7 312 63.8
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 4.3e-47 193.4 307 51.1
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 5.6e-47 193.0 312 70.5
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 9.5e-47 192.2 311 63.3
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 9.5e-47 192.2 312 68.9
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 1.6e-46 191.4 311 63.7
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 1.6e-46 191.4 317 61.5
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.1e-46 191.0 311 65.6
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 2.1e-46 191.0 313 61.0
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 2.1e-46 191.0 311 86.5
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 2.8e-46 190.7 310 71.6
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 2.8e-46 190.7 312 66.7
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 3.6e-46 190.3 319 60.2
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 4.7e-46 189.9 311 87.1
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 6.2e-46 189.5 307 70.4
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 2.3e-45 187.6 307 70.0
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 3.1e-45 187.2 318 60.4
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 4.0e-45 186.8 309 61.2
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 5.2e-45 186.4 312 68.6
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 8.9e-45 185.7 305 50.2
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 1.2e-44 185.3 318 59.7
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 2.0e-44 184.5 315 59.4
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 3.4e-44 183.7 313 59.7
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 3.4e-44 183.7 339 48.1
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 4.4e-44 183.3 315 60.3
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 5.8e-44 183.0 308 85.1
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 7.5e-44 182.6 313 59.7
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 9.8e-44 182.2 309 62.5
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 1.3e-43 181.8 312 46.5
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 4.9e-43 179.9 318 58.8
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 4.9e-43 179.9 310 67.7
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 8.3e-43 179.1 316 77.2
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 1.1e-42 178.7 310 69.7
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 1.4e-42 178.3 308 36.4
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 1.4e-42 178.3 310 68.7
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.4e-42 177.6 309 61.5
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.4e-42 176.4 310 84.5
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 7.0e-42 176.0 310 69.0
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 1.2e-41 175.3 320 59.1
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.2e-41 175.3 398 48.5
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.6e-41 174.9 310 68.4
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 2.1e-41 174.5 312 59.6
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 4.6e-41 173.3 311 77.2
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 4.6e-41 173.3 313 75.1
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.3e-40 171.8 310 59.7
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.3e-40 171.0 306 69.3
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 5.1e-40 169.9 90 84.4
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 5.1e-40 169.9 296 44.3
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 6.6e-40 169.5 312 59.9
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 1.1e-39 168.7 312 58.7
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.3e-39 167.2 90 83.3
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 4.3e-39 166.8 308 59.4
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 5.6e-39 166.4 308 34.4
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 7.3e-39 166.0 287 71.8
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 9.5e-39 165.6 90 80.0
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 1.6e-38 164.9 90 81.1
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 2.1e-38 164.5 308 82.1
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 2.1e-38 164.5 344 46.8
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 2.8e-38 164.1 96 79.2
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 6.2e-38 162.9 309 59.9
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 1.1e-37 162.2 312 61.2
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 3.1e-37 160.6 90 78.9
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 6.8e-37 159.5 312 56.7
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 6.8e-37 159.5 307 64.2
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 8.9e-37 159.1 90 76.7
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 1.2e-36 158.7 94 74.5
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-36 157.9 320 33.8
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.0e-36 157.9 310 61.9
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 2.6e-36 157.5 308 51.6
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 7.5e-36 156.0 90 77.8
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.5e-36 156.0 90 76.7
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 9.9e-36 155.6 90 73.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.3e-35 155.2 89 77.5
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.3e-35 155.2 287 45.6
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 1.7e-35 154.8 282 87.9
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 1.7e-35 154.8 90 76.7
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.7e-35 154.8 311 63.0
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.2e-35 154.5 345 31.9
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 2.9e-35 154.1 89 76.4
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 1.1e-34 152.1 88 75.0
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.1e-34 152.1 285 70.9
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.4e-34 151.8 88 75.0
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.4e-34 151.8 281 45.9
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 2.4e-34 151.0 96 72.9
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 5.4e-34 149.8 94 72.3
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 5.4e-34 149.8 311 81.7
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 5.4e-34 149.8 283 64.7
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 7.1e-34 149.4 88 73.9
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 7.1e-34 149.4 89 73.0
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 1.2e-33 148.7 312 32.7
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.6e-33 148.3 326 31.9
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 2.1e-33 147.9 303 68.3
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 3.5e-33 147.1 312 32.4
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 7.8e-33 146.0 107 62.6
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.0e-32 145.6 305 32.5
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.3e-32 145.2 318 54.7
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.7e-32 144.8 90 73.3
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 2.3e-32 144.4 96 70.8
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 3.9e-32 143.7 87 71.3
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 5.1e-32 143.3 313 31.3
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 5.1e-32 143.3 91 72.5
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 6.6e-32 142.9 313 31.0
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 6.6e-32 142.9 315 31.7
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 6.6e-32 142.9 303 31.7
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.5e-31 141.7 313 59.7
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 3.3e-31 140.6 93 68.8
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 2.1e-30 137.9 328 29.3
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.1e-29 135.6 135 49.6
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.1e-29 135.6 93 65.6
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 6.8e-29 132.9 75 77.3
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 5.8e-28 129.8 314 30.6
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 5.8e-28 129.8 93 61.3
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 1.1e-26 125.6 90 66.7
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 4.6e-25 120.2 268 44.8
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 1.3e-24 118.6 289 46.4
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 1.5e-23 115.2 67 73.1
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.6e-22 111.7 93 59.1
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.6e-22 111.7 68 73.5
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.1e-21 109.0 54 92.6
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 1.1e-21 109.0 55 90.9
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 1.2e-20 105.5 52 94.2
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 2.0e-20 104.8 55 85.5
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 2.6e-20 104.4 55 87.3
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 3.4e-20 104.0 55 85.5
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 5.8e-20 103.2 51 90.2
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 7.6e-20 102.8 52 88.5
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 1.7e-19 101.7 54 87.0
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 6.4e-19 99.8 90 55.6
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 1.1e-18 99.0 51 90.2
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 7.1e-18 96.3 92 46.7
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 9.3e-18 95.9 313 27.5
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 4.6e-17 93.6 54 79.6
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 7.8e-17 92.8 90 46.7
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 3.0e-16 90.9 55 72.7
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 1.9e-15 88.2 71 59.2
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 1.9e-15 88.2 92 38.0
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 1.9e-15 88.2 85 45.9
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 3.3e-15 87.4 54 72.2
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.6e-14 84.0 98 42.9
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 1.1e-13 82.4 94 45.7
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 9.0e-13 79.3 64 60.9
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 4.9e-11 73.6 75 48.0
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.4e-10 72.0 44 72.7
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 5.4e-10 70.1 41 68.3
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 9.3e-10 69.3 33 97.0
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 2.1e-09 68.2 42 69.0
Medtr8g085230 Medicago truncatula HOM05D003773 ORTHO05D004377 8.7e-08 62.8 36 83.3
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.5e-07 62.0 29 82.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.9e-07 61.6 29 96.6
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 8.1e-06 56.2 90 38.9


User provided reference genes

Program Settings