Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.8e-172 608.2 343 100.0
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.6e-101 373.6 318 70.8
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-101 372.5 325 71.7
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.0e-100 370.9 312 74.4
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 5.1e-100 368.6 311 74.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 3.3e-99 365.9 310 73.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.3e-98 364.0 311 70.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.8e-98 362.8 309 72.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 9.1e-97 357.8 311 73.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 9.1e-97 357.8 311 72.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.7e-96 354.8 311 71.7
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.7e-95 353.6 310 69.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.2e-94 349.4 311 71.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 7.2e-94 348.2 311 69.8
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.6e-93 347.1 312 71.5
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.1e-93 346.7 320 60.9
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.7e-93 346.3 312 69.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.6e-93 345.9 317 70.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.8e-92 343.6 311 68.2
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.9e-92 342.4 311 70.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.7e-92 341.7 313 68.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-91 340.9 311 70.4
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 7.4e-91 338.2 311 60.1
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.4e-91 338.2 312 72.4
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.7e-90 337.0 312 68.6
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.8e-90 336.3 310 69.7
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 4.8e-90 335.5 313 68.1
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.1e-89 334.3 314 70.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.8e-89 333.6 312 67.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 3.1e-89 332.8 309 69.6
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 7.0e-89 331.6 310 68.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.0e-88 330.1 310 67.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.6e-88 329.7 312 65.4
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.6e-88 329.7 279 74.2
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.5e-88 328.9 311 63.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.9e-88 328.6 310 68.7
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 7.7e-88 328.2 311 59.2
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.0e-87 327.8 279 73.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.3e-87 327.4 316 58.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.7e-87 327.0 313 59.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 6.5e-87 325.1 316 67.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.9e-86 323.6 314 61.1
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.5e-86 322.0 306 59.2
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 7.2e-86 321.6 344 55.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-85 319.7 319 66.1
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.7e-85 319.7 310 68.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 3.6e-85 319.3 311 65.9
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.9e-84 315.8 311 67.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 5.2e-84 315.5 311 65.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 6.7e-84 315.1 311 67.5
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 6.7e-84 315.1 312 67.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.1e-83 314.3 312 59.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.0e-83 313.5 333 55.0
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.0e-83 313.5 310 66.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.7e-83 312.0 313 65.2
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 7.4e-83 311.6 319 64.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.3e-82 310.8 311 66.6
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.3e-82 310.8 312 59.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.8e-82 309.7 314 59.9
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-82 309.7 287 69.7
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 3.7e-82 309.3 314 59.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.7e-82 309.3 314 59.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.7e-82 309.3 317 66.2
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.8e-81 307.0 312 65.1
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.8e-81 307.0 314 59.6
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 4.1e-81 305.8 315 61.6
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 5.3e-81 305.4 312 66.7
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.2e-80 304.3 314 58.9
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.6e-80 303.9 310 65.2
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.5e-80 302.4 313 64.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 5.9e-80 302.0 312 58.3
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.0e-79 301.2 316 56.6
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-79 300.8 316 57.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.3e-79 300.8 312 63.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-79 300.1 315 56.5
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 3.8e-79 299.3 310 63.2
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.8e-79 299.3 281 58.0
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.0e-79 298.9 314 56.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 8.5e-79 298.1 266 72.6
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 8.5e-79 298.1 287 57.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.1e-78 297.7 317 62.5
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.5e-78 297.4 325 62.5
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.5e-78 297.4 310 64.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.4e-78 294.7 314 56.1
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.1e-77 292.0 339 57.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.1e-77 292.0 339 57.8
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-76 290.8 339 60.5
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-76 290.4 315 55.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-75 287.3 326 60.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 6.3e-74 282.0 316 56.6
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.8e-73 280.4 233 64.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-72 277.7 318 61.6
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-72 277.7 316 53.2
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-71 274.2 333 59.2
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-71 274.2 333 59.2
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.7e-71 273.9 312 51.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.7e-71 273.9 340 49.1
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 8.5e-71 271.6 295 53.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.1e-70 271.2 232 74.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.2e-70 269.6 310 58.7
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.2e-69 267.7 233 62.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.7e-69 265.8 273 65.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.1e-69 265.4 310 50.3
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 8.0e-69 265.0 311 52.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.3e-68 263.5 318 51.6
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 4.0e-68 262.7 238 61.3
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 5.7e-67 258.8 273 54.9
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.5e-67 258.5 324 56.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.3e-66 257.7 324 56.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 6.3e-66 255.4 240 70.0
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.8e-65 253.8 231 70.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.4e-65 253.4 271 63.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-65 253.4 231 70.6
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 9.1e-65 251.5 313 49.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.7e-64 248.4 239 69.5
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 5.0e-63 245.7 312 50.3
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.5e-62 244.2 233 69.5
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 9.5e-62 241.5 311 58.5
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 9.5e-62 241.5 311 57.2
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 4.4e-59 232.6 232 68.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.4e-57 226.9 219 70.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.6e-56 224.2 231 65.4
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 6.6e-55 218.8 219 68.9
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-54 217.2 299 48.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-52 211.1 247 53.0
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.2e-50 203.8 229 52.4
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 8.3e-50 201.8 235 53.2
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 8.3e-50 201.8 235 53.2
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.5e-46 190.3 244 60.2
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 6.2e-45 185.7 220 65.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.1e-41 174.9 195 67.7
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.5e-38 161.8 317 37.2
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.2e-37 161.4 170 65.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 3.6e-37 159.8 161 57.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 4.7e-37 159.5 202 47.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-35 154.8 145 60.0
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-35 154.5 166 54.8
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 4.4e-35 152.9 173 67.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.7e-31 141.0 246 40.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.4e-27 126.3 249 45.0
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.1e-25 121.7 91 70.3
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.3e-23 114.8 150 62.0
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 4.3e-22 109.8 330 37.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.2e-19 101.7 282 40.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.0e-16 89.4 55 83.6
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.0e-15 88.6 130 43.1
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.0e-15 87.0 332 29.2
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 3.1e-12 77.0 149 35.6
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.0e-12 76.6 69 63.8
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.5e-11 74.7 54 68.5
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 2.0e-11 74.3 104 44.2
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.0e-11 74.3 70 57.1
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.4e-11 73.6 102 45.1
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-06 57.8 44 68.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.3e-06 56.6 44 65.9


User provided reference genes

Program Settings