Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0205900 Rhododendron simsii HOM05D001692 ORTHO05D005276 3.4e-39 164.5 80 100.0
vmacro09423 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 5.1e-35 150.6 80 90.0
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 1.8e-32 142.1 77 85.7
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 5.3e-32 140.6 77 84.4
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 4.5e-31 137.5 77 83.1
Gohir.D03G015800 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.3e-30 136.0 78 82.1
Gohir.D06G025300 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.3e-30 136.0 78 82.1
Gohir.D11G187900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.3e-30 136.0 78 82.1
Peaxi162Scf00000g05119 Petunia axillaris HOM05D001692 ORTHO05D005276 2.2e-30 135.2 72 84.7
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.8e-30 134.4 74 81.1
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.8e-30 134.4 74 81.1
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 3.8e-30 134.4 79 81.0
Gorai.006G053200 Gossypium raimondii HOM05D001692 ORTHO05D005276 6.5e-30 133.7 79 78.5
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 8.5e-30 133.3 79 79.7
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 8.5e-30 133.3 74 81.1
CiPaw.03G191700 Carya illinoinensis HOM05D001692 ORTHO05D005276 1.1e-29 132.9 74 81.1
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 1.1e-29 132.9 79 79.7
Gorai.005G073200 Gossypium raimondii HOM05D001692 ORTHO05D005276 1.4e-29 132.5 79 78.5
GSVIVG01020841001 Vitis vinifera HOM05D001692 ORTHO05D005276 1.9e-29 132.1 74 79.7
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 2.5e-29 131.7 73 82.2
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.5e-29 131.7 80 80.0
GSVIVG01000481001 Vitis vinifera HOM05D001692 ORTHO05D005276 3.2e-29 131.3 75 78.7
Gohir.D04G055900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 4.2e-29 131.0 79 78.5
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 5.5e-29 130.6 73 80.8
Lj8A144G64 Lonicera japonica HOM05D001692 ORTHO05D005276 5.5e-29 130.6 71 83.1
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 5.5e-29 130.6 73 82.2
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 7.2e-29 130.2 73 79.5
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 7.2e-29 130.2 73 80.8
CANSAT56G0439 Cannabis sativa HOM05D001692 ORTHO05D005276 9.4e-29 129.8 72 83.3
FAN02G2152 Fragaria x ananassa HOM05D001692 ORTHO05D005276 9.4e-29 129.8 75 78.7
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 9.4e-29 129.8 72 80.6
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 9.4e-29 129.8 72 79.2
PGSC0003DMG400008562 Solanum tuberosum HOM05D001692 ORTHO05D005276 9.4e-29 129.8 72 79.2
TWI59G0785 Tripterygium wilfordii HOM05D001692 ORTHO05D005276 9.4e-29 129.8 74 79.7
Ciclev10021343m.g Citrus clementina HOM05D001692 ORTHO05D005276 1.2e-28 129.4 73 78.1
FvH4_6g38610 Fragaria vesca HOM05D001692 ORTHO05D005276 1.2e-28 129.4 74 79.7
FAN05G1140 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.2e-28 129.4 74 79.7
Sabra16G0250400 Salix brachista HOM05D001692 ORTHO05D005276 1.2e-28 129.4 72 79.2
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 1.2e-28 129.4 72 79.2
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 1.6e-28 129.0 73 80.8
Prupe.3G177200 Prunus persica HOM05D001692 ORTHO05D005276 1.6e-28 129.0 74 77.0
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 1.6e-28 129.0 72 80.6
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 1.6e-28 129.0 73 80.8
CANSAT64G1255 Cannabis sativa HOM05D001692 ORTHO05D005276 2.1e-28 128.6 74 77.0
Eucgr.A02020 Eucalyptus grandis HOM05D001692 ORTHO05D005276 2.1e-28 128.6 72 79.2
Peaxi162Scf00111g00115 Petunia axillaris HOM05D001692 ORTHO05D005276 2.1e-28 128.6 71 81.7
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 2.7e-28 128.3 71 81.7
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 2.7e-28 128.3 72 79.2
CAN.G375.74 Capsicum annuum HOM05D001692 ORTHO05D005276 3.6e-28 127.9 72 79.2
MD09G1149000 Malus domestica HOM05D001692 ORTHO05D005276 3.6e-28 127.9 74 77.0
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 3.6e-28 127.9 73 78.1
Sc03g0010860 Simmondsia chinensis HOM05D001692 ORTHO05D005276 3.6e-28 127.9 79 75.9
TPR.G19262 Trifolium pratense HOM05D001692 ORTHO05D005276 3.6e-28 127.9 71 83.1
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 4.6e-28 127.5 71 81.7
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 4.6e-28 127.5 74 77.0
Oeu001313.1 Olea europaea HOM05D001692 ORTHO05D005276 4.6e-28 127.5 73 79.5
Os01g0667200 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D005276 4.6e-28 127.5 75 77.3
PSO541G6360 Papaver somniferum HOM05D001692 ORTHO05D005276 4.6e-28 127.5 72 79.2
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 6.1e-28 127.1 73 80.8
FAN14G4917 Fragaria x ananassa HOM05D001692 ORTHO05D005276 6.1e-28 127.1 73 79.5
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 6.1e-28 127.1 71 80.3
PSO675G6085 Papaver somniferum HOM05D001692 ORTHO05D005276 6.1e-28 127.1 73 78.1
RcHm_v2.0_Chr2g0152061 Rosa chinensis HOM05D001692 ORTHO05D005276 6.1e-28 127.1 74 77.0
Aqoxy1G01726 Aquilegia oxysepala HOM05D001692 ORTHO05D005276 7.9e-28 126.7 73 76.7
BcaC08g43540 Brassica carinata HOM05D001692 ORTHO05D005276 7.9e-28 126.7 77 75.3
Manes.02G089400 Manihot esculenta HOM05D001692 ORTHO05D005276 7.9e-28 126.7 72 79.2
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 7.9e-28 126.7 71 81.7
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 7.9e-28 126.7 71 78.9
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 1.0e-27 126.3 71 81.7
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 1.0e-27 126.3 73 76.7
C06p09290 Brassica napus HOM05D001692 ORTHO05D005276 1.4e-27 125.9 77 75.3
unitig_899.g15303 Utricularia gibba HOM05D001692 ORTHO05D005276 1.4e-27 125.9 73 76.7
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 1.8e-27 125.6 75 76.0
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 1.8e-27 125.6 74 77.0
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 1.8e-27 125.6 74 77.0
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.8e-27 125.6 71 78.9
HPP92_009985 Vanilla planifolia HOM05D001692 ORTHO05D005276 1.8e-27 125.6 78 74.4
AL1G62170 Arabidopsis lyrata HOM05D001692 ORTHO05D005276 2.3e-27 125.2 73 78.1
AT1G53580 Arabidopsis thaliana HOM05D001692 ORTHO05D005276 2.3e-27 125.2 73 78.1
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 2.3e-27 125.2 73 78.1
AUR62037988 Chenopodium quinoa HOM05D001692 ORTHO05D005276 2.3e-27 125.2 75 77.3
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 2.3e-27 125.2 72 76.4
PGR042G3356 Punica granatum HOM05D001692 ORTHO05D005276 2.3e-27 125.2 74 75.7
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 2.3e-27 125.2 73 78.1
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 2.3e-27 125.2 72 80.6
A06p00940 Brassica napus HOM05D001692 ORTHO05D005276 3.0e-27 124.8 75 77.3
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 3.0e-27 124.8 75 76.0
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 3.0e-27 124.8 78 74.4
Sabra05G0155400 Salix brachista HOM05D001692 ORTHO05D005276 3.0e-27 124.8 74 74.3
BcaB07g33320 Brassica carinata HOM05D001692 ORTHO05D005276 3.9e-27 124.4 73 76.7
SGA_v2.0_scaffold70G23592 Striga asiatica HOM05D001692 ORTHO05D005276 3.9e-27 124.4 69 81.2
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 5.1e-27 124.0 73 76.7
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 5.1e-27 124.0 72 76.4
MSTRG.15020 Avicennia marina HOM05D001692 ORTHO05D005276 5.1e-27 124.0 72 79.2
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 8.8e-27 123.2 75 74.7
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 8.8e-27 123.2 75 74.7
FAN09G0561 Fragaria x ananassa HOM05D001692 ORTHO05D005276 8.8e-27 123.2 75 74.7
COL.COLO4_08889 Corchorus olitorius HOM05D001692 ORTHO05D005276 1.1e-26 122.9 77 75.3
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 1.1e-26 122.9 74 74.3
EL10Ac4g08464 Beta vulgaris HOM05D001692 ORTHO05D005276 1.5e-26 122.5 75 77.3
BcaB04g17072 Brassica carinata HOM05D001692 ORTHO05D005276 1.5e-26 122.5 73 76.7
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 1.5e-26 122.5 73 78.1
CsaV3_4G032640 Cucumis sativus L. HOM05D001692 ORTHO05D005276 1.5e-26 122.5 74 74.3
Thhalv10011701m.g Eutrema salsugineum HOM05D001692 ORTHO05D005276 2.0e-26 122.1 72 76.4
Potri.005G204800 Populus trichocarpa HOM05D001692 ORTHO05D005276 2.0e-26 122.1 74 71.6
ATR0585G035 Amborella trichopoda HOM05D001692 ORTHO05D005276 3.3e-26 121.3 72 76.4
BraA08t32202Z Brassica rapa HOM05D001692 ORTHO05D005276 3.3e-26 121.3 72 76.4
DCAR_019628 Daucus carota HOM05D001692 ORTHO05D005276 3.3e-26 121.3 71 78.9
Sed0012666 Sechium edule HOM05D001692 ORTHO05D005276 4.3e-26 120.9 74 74.3
CDE02G3376 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 5.7e-26 120.6 72 76.4
A08p01500 Brassica napus HOM05D001692 ORTHO05D005276 7.4e-26 120.2 72 75.0
CARHR043840 Cardamine hirsuta HOM05D001692 ORTHO05D005276 7.4e-26 120.2 73 75.3
Cc05_g10460 Coffea canephora HOM05D001692 ORTHO05D005276 1.3e-25 119.4 71 77.5
Sed0008182 Sechium edule HOM05D001692 ORTHO05D005276 1.3e-25 119.4 74 73.0
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 1.7e-25 119.0 72 76.4
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 2.2e-25 118.6 74 73.0
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 2.2e-25 118.6 71 74.6
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 2.8e-25 118.2 66 80.3
Nn4g26535 Nelumbo nucifera HOM05D001692 ORTHO05D005276 2.8e-25 118.2 72 73.6
Pp3c9_13000 Physcomitrium patens HOM05D001692 ORTHO05D005276 2.8e-25 118.2 76 73.7
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 8.2e-25 116.7 70 75.7
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 1.4e-24 115.9 70 74.3
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 1.8e-24 115.5 72 75.0
SMO364G0689 Selaginella moellendorffii HOM05D001692 ORTHO05D005276 3.1e-24 114.8 72 75.0
Mapoly0002s0284 Marchantia polymorpha HOM05D001692 ORTHO05D005276 4.1e-24 114.4 72 72.2
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 6.9e-24 113.6 71 74.6
MBI10_g02223_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.5e-23 112.5 73 75.3
MBI10_g05866_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.5e-23 112.5 73 75.3
BolC6t36007H Brassica oleracea HOM05D001692 ORTHO05D005276 1.3e-22 109.4 64 78.1
Pp3c15_10210 Physcomitrium patens HOM05D001692 ORTHO05D005276 2.2e-22 108.6 72 68.1
CBR_g52354 Chara braunii HOM05D001692 ORTHO05D005276 5.0e-22 107.5 71 69.0
CARHR043830 Cardamine hirsuta HOM05D001692 ORTHO05D005276 4.2e-21 104.4 71 67.6
CARHR042800 Cardamine hirsuta HOM05D001692 ORTHO05D005276 7.2e-21 103.6 69 69.6
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 2.1e-20 102.1 57 78.9
Zm00001eb157380 Zea mays HOM05D001692 ORTHO05D005276 3.6e-20 101.3 123 45.5
Hund10367 Selenicereus undatus HOM05D001692 ORTHO05D005276 1.4e-19 99.4 131 43.5
Gorai.013G082600 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.0e-18 95.5 52 84.6
PRCOL_00005441 Prasinoderma coloniale HOM05D001692 ORTHO05D005276 2.0e-18 95.5 71 60.6
PGSC0003DMG400007053 Solanum tuberosum HOM05D001692 ORTHO05D005276 4.8e-17 90.9 49 83.7
Psat1g009000 Pisum sativum HOM05D001692 ORTHO05D005276 2.4e-16 88.6 47 87.2
MCO11G587 Micromonas commoda HOM05D001692 ORTHO05D005276 4.1e-16 87.8 76 55.3
CAN.G1320.2 Capsicum annuum HOM05D001692 ORTHO05D005276 9.1e-16 86.7 52 73.1
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 5.9e-15 84.0 68 58.8
Lalb_Chr25g0285521 Lupinus albus HOM05D001692 ORTHO05D005276 1.7e-14 82.4 47 78.7
SHI03282 Sapria himalayana HOM05D001692 ORTHO05D005276 8.5e-14 80.1 49 75.5
MELO3C025595.2 Cucumis melo HOM05D001692 ORTHO05D005276 1.9e-13 79.0 52 69.2
Duzib213G0109 Durio zibethinus HOM05D001692 ORTHO05D005276 2.7e-12 75.1 40 85.0
Thecc.01G169600 Theobroma cacao HOM05D001692 ORTHO05D005276 6.1e-12 73.9 43 76.7
Nitab4.5_0005492g0050 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.8e-11 72.4 39 82.1


User provided reference genes

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