Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 0.0e+00 1151.0 581 100.0
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 0.0e+00 1086.6 608 91.0
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 1.2e-226 790.0 579 73.2
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 1.4e-203 713.4 564 66.1
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.4e-177 627.1 564 58.3
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 4.8e-175 618.6 561 59.7
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 1.7e-172 610.1 561 57.6
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 2.5e-171 606.3 561 56.5
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 2.7e-170 602.8 561 57.8
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.7e-170 602.1 561 57.4
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 1.4e-169 600.5 562 56.0
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 2.3e-169 599.7 561 55.6
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 3.0e-169 599.4 557 55.7
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 3.3e-168 595.9 563 56.8
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 9.7e-168 594.3 557 56.0
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 1.1e-166 590.9 586 55.1
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 2.7e-165 586.3 562 56.2
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 2.9e-164 582.8 563 54.9
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 2.7e-162 576.2 564 55.0
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 3.0e-161 572.8 563 53.8
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 3.0e-161 572.8 589 53.3
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.7e-159 567.0 556 55.6
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.1e-158 562.8 589 52.8
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 4.5e-157 558.9 562 52.3
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 4.2e-155 552.4 566 53.7
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 6.1e-154 548.5 561 52.8
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 9.8e-152 541.2 560 52.1
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 3.7e-151 539.3 559 50.1
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 1.4e-150 537.3 565 51.3
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 2.0e-149 533.5 603 49.3
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 5.9e-149 531.9 519 54.1
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 7.8e-149 531.6 560 50.0
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.8e-148 529.3 539 53.6
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.6e-146 523.9 569 51.1
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 2.1e-146 523.5 566 51.1
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 2.1e-146 523.5 564 51.6
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 2.8e-146 523.1 558 51.1
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 2.0e-144 516.9 560 52.0
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 7.0e-142 508.4 572 50.5
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 4.6e-141 505.8 566 50.0
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 7.8e-141 505.0 565 49.6
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 7.8e-141 505.0 555 50.3
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 6.6e-140 501.9 572 48.6
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 6.6e-140 501.9 565 49.6
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 8.6e-140 501.5 566 49.5
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.3e-139 499.6 565 49.2
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 4.3e-139 499.2 565 49.4
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 4.3e-139 499.2 542 49.1
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 6.2e-138 495.4 565 48.8
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 8.0e-138 495.0 562 47.2
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 8.0e-138 495.0 428 60.7
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 3.1e-137 493.0 560 49.6
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 8.9e-137 491.5 567 48.3
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 2.6e-136 490.0 585 48.2
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 9.8e-136 488.0 559 49.6
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 9.2e-134 481.5 554 49.3
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 1.7e-132 477.2 558 49.3
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.1e-131 474.6 373 65.7
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 1.9e-131 473.8 565 47.1
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 1.1e-129 468.0 596 46.8
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 1.1e-129 468.0 575 48.7
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.1e-129 468.0 562 46.3
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 1.4e-129 467.6 561 47.8
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 2.3e-129 466.8 564 45.9
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 5.2e-129 465.7 554 47.5
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 1.2e-128 464.5 561 47.4
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 6.0e-125 452.2 538 46.8
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 4.3e-123 446.0 549 44.6
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 9.2e-118 428.3 536 47.0
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.6e-117 427.6 478 49.4
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 2.7e-117 426.8 552 45.3
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.7e-117 426.8 536 46.8
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.5e-115 421.0 555 44.9
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 4.3e-115 419.5 345 63.5
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 5.3e-113 412.5 532 46.6
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 2.9e-111 406.8 471 47.6
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 3.8e-111 406.4 554 42.2
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 9.3e-110 401.7 406 56.7
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 2.3e-108 397.1 502 44.2
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 2.0e-104 384.0 562 42.2
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 4.9e-103 379.4 566 40.5
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.4e-102 377.9 631 40.3
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 7.9e-93 345.5 592 39.4
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 3.9e-92 343.2 324 56.2
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 2.5e-91 340.5 359 52.6
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 6.5e-87 325.9 572 38.1
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 2.1e-85 320.9 214 75.2
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 5.5e-78 296.2 289 57.1
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 1.4e-68 265.0 558 34.1
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 8.5e-63 245.7 293 50.9
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 1.0e-60 238.8 490 33.3
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.0e-44 185.7 196 51.0
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 1.2e-35 155.6 167 52.1
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 9.8e-27 125.9 215 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 1.4e-25 122.1 253 30.8
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 3.2e-25 120.9 112 51.8
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 4.3e-22 110.5 134 48.5
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 9.5e-22 109.4 74 68.9
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-20 105.5 173 39.3
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-20 105.5 173 39.3
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 1.4e-20 105.5 152 40.8
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 6.8e-20 103.2 136 42.6
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 3.4e-19 100.9 133 39.8
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 2.9e-18 97.8 108 48.1
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 5.4e-17 93.6 72 63.9
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 6.0e-16 90.1 168 37.5
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.9e-14 85.1 58 69.0
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 1.2e-11 75.9 74 51.4
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 1.7e-10 72.0 65 56.9
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 2.2e-10 71.6 237 30.4
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 2.9e-10 71.2 237 32.1
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 3.7e-10 70.9 240 30.4
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 4.1e-09 67.4 249 28.9
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.1e-08 65.1 240 29.6
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 4.6e-08 63.9 237 29.5
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 4.6e-08 63.9 242 28.9
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 6.0e-08 63.5 237 30.0
unitig_8.g3057 Utricularia gibba HOM05D003769 ORTHO05D004521 6.0e-08 63.5 240 28.8
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 3.9e-07 60.8 240 28.3
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 3.9e-07 60.8 237 28.7
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 2.5e-06 58.2 240 28.3
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 3.3e-06 57.8 237 27.0
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 3.3e-06 57.8 237 25.7
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 4.3e-06 57.4 240 27.1
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.6e-06 57.0 237 26.6
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.6e-06 57.0 237 26.6
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.6e-06 57.0 237 26.6
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 7.3e-06 56.6 291 26.8
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 7.3e-06 56.6 267 27.7
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 7.3e-06 56.6 237 25.7
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 7.3e-06 56.6 237 26.6
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 7.3e-06 56.6 240 26.7
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 9.6e-06 56.2 237 26.2


User provided reference genes

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