Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.1e-105 386.7 202 100.0
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.1e-105 383.6 202 99.0
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.6e-93 345.1 209 89.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 8.6e-79 297.4 208 80.3
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.2e-78 294.3 206 79.6
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 8.0e-77 290.8 203 80.8
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.3e-76 289.3 202 81.2
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.0e-75 286.2 208 77.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.8e-73 279.6 207 75.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.6e-72 276.6 206 73.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.6e-72 276.6 206 73.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.9e-72 274.6 206 73.3
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 7.8e-72 274.2 206 73.3
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 3.9e-71 271.9 203 72.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.0e-71 271.6 203 71.9
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.6e-71 271.2 203 72.4
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.5e-70 270.0 202 71.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.9e-70 269.6 207 72.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 3.3e-70 268.9 201 70.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.3e-70 267.7 202 71.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.3e-70 267.7 204 73.5
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 9.5e-70 267.3 207 72.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.2e-69 266.9 205 70.2
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.6e-69 266.5 207 72.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.1e-69 266.2 209 72.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.1e-69 266.2 149 91.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.8e-69 265.8 208 72.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.8e-69 265.8 208 72.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.6e-69 265.4 208 71.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 3.6e-69 265.4 201 68.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 8.0e-69 264.2 206 69.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 8.0e-69 264.2 208 73.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 8.0e-69 264.2 207 72.9
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.0e-68 263.8 207 71.0
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.8e-68 263.1 207 68.6
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.1e-68 262.3 181 78.5
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.1e-68 262.3 181 78.5
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.5e-67 260.0 207 69.6
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.0e-67 259.6 207 69.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.4e-67 258.8 205 69.3
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.4e-67 258.5 201 70.6
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.8e-67 258.1 149 86.6
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.8e-67 258.1 178 75.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 5.8e-67 258.1 200 72.0
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 7.5e-67 257.7 201 68.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 7.5e-67 257.7 210 70.0
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 7.5e-67 257.7 179 76.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-66 256.5 149 85.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.7e-66 256.5 203 69.0
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.2e-66 256.1 202 73.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.9e-66 255.8 206 71.4
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.4e-65 253.4 223 65.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.4e-65 253.4 204 69.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.9e-65 253.1 149 85.9
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.2e-65 252.3 207 66.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.2e-65 252.3 146 86.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 4.1e-65 251.9 206 67.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.4e-65 251.5 176 76.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.4e-65 251.5 187 71.7
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.2e-65 250.8 204 69.1
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 9.2e-65 250.8 202 68.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 9.2e-65 250.8 201 69.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.2e-64 250.4 205 66.3
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.2e-64 250.4 149 82.6
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-64 250.0 149 83.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.6e-64 248.4 204 65.2
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 6.0e-64 248.1 178 70.8
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 6.0e-64 248.1 151 82.8
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.0e-64 248.1 153 79.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 7.8e-64 247.7 207 67.6
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.0e-63 247.3 149 83.2
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.7e-63 246.5 190 68.9
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.3e-63 246.1 212 67.9
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.3e-63 246.1 196 70.4
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 3.9e-63 245.4 207 65.7
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.0e-63 245.0 236 60.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.1e-62 243.8 169 75.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.1e-62 243.8 169 75.7
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.5e-62 242.7 202 66.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.3e-62 242.3 149 81.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.3e-62 242.3 253 57.7
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 3.3e-62 242.3 152 80.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 9.5e-62 240.7 149 82.6
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-61 240.4 149 80.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.6e-61 240.0 156 76.9
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.6e-61 240.0 169 74.6
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.7e-61 238.4 205 66.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 4.7e-61 238.4 147 80.3
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 8.0e-61 237.7 142 85.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 8.0e-61 237.7 201 68.7
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-60 237.3 202 68.8
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-60 236.9 201 68.7
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-60 236.5 184 67.4
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.8e-60 236.5 210 62.9
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.2e-60 235.0 212 65.6
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.2e-60 235.0 149 80.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 6.8e-60 234.6 149 81.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 8.9e-60 234.2 202 67.8
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.2e-59 233.8 147 79.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.5e-59 233.4 201 65.2
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 2.6e-59 232.6 149 76.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.6e-59 232.6 149 75.8
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 4.4e-59 231.9 186 67.2
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 4.4e-59 231.9 149 79.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 5.8e-59 231.5 210 61.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.5e-59 231.1 199 66.3
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.8e-59 230.7 149 77.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.3e-58 230.3 143 79.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-58 230.3 146 78.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 3.7e-58 228.8 239 59.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.9e-58 228.4 149 78.5
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-57 226.1 218 63.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-57 226.1 218 63.8
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-57 225.7 186 64.5
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 3.2e-57 225.7 212 61.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.7e-56 222.6 208 62.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.7e-56 222.6 202 60.9
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.5e-56 222.2 211 60.2
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-55 220.3 218 62.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.3e-55 219.5 160 71.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.1e-54 217.2 148 75.7
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.3e-54 214.5 151 72.2
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-53 213.8 149 73.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.6e-53 212.2 124 85.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 8.1e-53 211.1 149 67.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.1e-52 210.7 192 64.6
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.8e-52 209.9 203 58.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.7e-50 203.4 177 65.5
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-50 203.4 149 73.8
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.9e-50 201.8 175 65.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.4e-49 199.5 219 54.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.4e-49 199.5 197 60.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.1e-49 198.0 156 68.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 2.1e-48 196.4 124 78.2
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.1e-48 196.4 147 68.7
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 2.7e-48 196.1 143 73.4
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.0e-48 194.9 162 64.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.3e-47 193.7 229 54.6
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.6e-45 186.8 157 62.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.6e-45 186.8 151 62.9
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.4e-44 183.0 193 52.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.2e-42 176.4 106 83.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-42 176.0 109 79.8
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 6.4e-42 174.9 150 60.7
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.1e-41 174.1 184 53.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-40 169.9 163 60.7
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.0e-39 166.0 112 75.0
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.3e-38 162.5 140 64.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.6e-35 152.9 94 85.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 4.2e-33 145.6 91 82.4
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.8e-32 141.4 82 82.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 6.2e-29 131.7 150 55.3
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 2.4e-28 129.8 133 56.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 3.4e-27 125.9 134 54.5
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 6.2e-21 105.1 164 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.1e-20 104.4 97 54.6
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.4e-20 104.0 79 68.4
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.7e-16 89.7 164 31.7
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.1e-14 84.3 77 62.3
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.8e-10 69.3 68 54.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 3.8e-10 69.3 100 45.0
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.8e-07 60.5 175 27.4
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.1e-06 57.8 33 75.8
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 4.3e-06 55.8 40 82.5


User provided reference genes

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