Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.8e-55 218.4 110 100.0
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.9e-38 160.2 83 96.4
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.6e-34 149.4 98 79.6
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.1e-32 143.3 83 83.1
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.1e-32 143.3 98 78.6
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.9e-32 142.5 98 74.5
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 5.6e-32 141.0 98 74.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-32 140.6 83 81.9
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-32 140.6 83 81.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 7.3e-32 140.6 98 74.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.8e-31 138.7 83 79.5
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.8e-31 138.7 98 72.4
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 3.6e-31 138.3 98 73.5
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 6.2e-31 137.5 83 80.7
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 8.1e-31 137.1 98 73.5
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.1e-30 136.7 98 72.4
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.4e-30 136.3 97 73.2
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.4e-30 136.3 83 79.5
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.4e-30 136.3 98 73.5
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.8e-30 136.0 83 78.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.8e-30 136.0 98 71.4
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.3e-30 135.6 104 68.3
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.3e-30 135.6 97 72.2
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.1e-30 135.2 83 77.1
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.0e-30 134.8 98 71.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 4.0e-30 134.8 98 73.5
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.0e-30 134.8 106 67.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.2e-30 134.4 83 79.5
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 5.2e-30 134.4 82 76.8
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 6.8e-30 134.0 82 80.5
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 6.8e-30 134.0 116 63.8
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.8e-30 134.0 98 72.4
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 8.9e-30 133.7 98 70.4
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 8.9e-30 133.7 97 72.2
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 8.9e-30 133.7 83 80.7
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 8.9e-30 133.7 97 71.1
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.9e-30 133.7 83 79.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.2e-29 133.3 98 71.4
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.5e-29 132.9 98 71.4
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.5e-29 132.9 98 71.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.5e-29 132.9 83 79.5
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.5e-29 132.9 83 79.5
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.0e-29 132.5 98 70.4
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.6e-29 132.1 116 64.7
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.4e-29 131.7 97 70.1
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 4.4e-29 131.3 83 77.1
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 4.4e-29 131.3 98 70.4
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.4e-29 131.3 98 71.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 7.5e-29 130.6 83 74.7
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 7.5e-29 130.6 83 74.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 7.5e-29 130.6 98 69.4
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 7.5e-29 130.6 84 76.2
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 9.9e-29 130.2 98 70.4
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 9.9e-29 130.2 83 75.9
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.3e-28 129.8 83 73.5
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.3e-28 129.8 116 62.9
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.7e-28 129.4 83 75.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.7e-28 129.4 83 73.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.7e-28 129.4 83 77.1
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.7e-28 129.4 96 69.8
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.2e-28 129.0 98 69.4
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 2.2e-28 129.0 98 71.4
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.2e-28 129.0 98 70.4
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.2e-28 129.0 98 70.4
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.9e-28 128.6 83 72.3
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 2.9e-28 128.6 115 64.3
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 3.7e-28 128.3 83 73.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 3.7e-28 128.3 115 64.3
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 3.7e-28 128.3 98 68.4
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 3.7e-28 128.3 98 69.4
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.9e-28 127.9 83 72.3
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 4.9e-28 127.9 98 67.3
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.9e-28 127.9 98 71.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.9e-28 127.9 98 71.4
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 4.9e-28 127.9 98 69.4
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 4.9e-28 127.9 98 70.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 4.9e-28 127.9 116 62.9
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.9e-28 127.9 94 67.0
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 6.4e-28 127.5 98 68.4
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.4e-28 127.5 98 69.4
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 6.4e-28 127.5 83 73.5
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 8.3e-28 127.1 83 71.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 8.3e-28 127.1 83 73.5
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 8.3e-28 127.1 98 69.4
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.1e-27 126.7 83 72.3
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.1e-27 126.7 114 63.2
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.1e-27 126.7 83 75.9
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.1e-27 126.7 94 70.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.4e-27 126.3 83 75.9
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.9e-27 125.9 98 68.4
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-27 125.9 98 71.4
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.9e-27 125.9 83 75.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.9e-27 125.9 98 68.4
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.9e-27 125.9 94 68.1
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.4e-27 125.6 92 72.8
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-27 125.6 98 70.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 2.4e-27 125.6 98 67.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.4e-27 125.6 116 62.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.4e-27 125.6 98 69.4
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.2e-27 125.2 97 67.0
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.2e-27 125.2 98 69.4
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.2e-27 125.2 98 70.4
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 3.2e-27 125.2 98 69.4
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 5.4e-27 124.4 83 74.7
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 5.4e-27 124.4 79 77.2
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 5.4e-27 124.4 80 76.2
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.1e-27 124.0 82 73.2
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.1e-27 124.0 98 69.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 9.2e-27 123.6 98 65.3
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.2e-26 123.2 97 67.0
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.6e-26 122.9 83 71.1
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.1e-26 122.5 83 71.1
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.1e-26 122.5 80 73.8
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.7e-26 122.1 83 71.1
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 2.7e-26 122.1 98 67.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 2.7e-26 122.1 98 67.3
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.7e-26 122.1 98 64.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 3.5e-26 121.7 98 67.3
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-26 121.3 83 74.7
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 4.6e-26 121.3 98 67.3
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 6.0e-26 120.9 83 73.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 7.8e-26 120.6 98 65.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.0e-25 120.2 83 68.7
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-25 120.2 83 72.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.0e-25 120.2 98 64.3
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.3e-25 119.0 83 68.7
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 3.0e-25 118.6 98 64.3
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.6e-25 117.1 91 68.1
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 8.6e-25 117.1 98 64.3
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 3.3e-24 115.2 83 67.5
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.3e-24 114.8 83 69.9
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 7.3e-24 114.0 103 59.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.8e-23 112.1 91 63.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 6.2e-23 110.9 83 68.7
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 4.0e-22 108.2 75 72.0
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 4.4e-21 104.8 83 63.9
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.7e-20 102.8 61 83.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 9.2e-19 97.1 83 62.7
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 9.2e-19 97.1 83 59.0
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.6e-18 94.7 94 51.1
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 7.8e-18 94.0 96 58.3
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.7e-17 92.8 98 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.1e-17 91.3 94 50.0
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 8.7e-17 90.5 93 57.0
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 4.3e-16 88.2 79 54.4
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 4.3e-16 88.2 82 54.9
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 5.6e-16 87.8 78 51.3
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.4e-14 83.2 80 52.5
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 7.8e-10 67.4 74 48.6
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.1e-08 63.5 73 43.8
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 4.3e-08 61.6 95 40.0


User provided reference genes

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