Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.2e-143 513.1 251 100.0
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.2e-116 422.5 214 96.7
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.9e-96 356.3 216 80.1
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.3e-96 355.1 216 80.1
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.6e-85 319.3 210 74.8
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.0e-73 280.8 207 68.1
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-73 280.0 208 68.3
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 5.3e-70 268.5 218 61.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 2.3e-65 253.1 217 59.9
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.2e-63 246.5 222 59.0
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.2e-63 244.6 214 59.3
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 3.1e-62 242.7 217 56.2
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.9e-62 241.5 224 57.6
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.6e-61 239.6 217 57.6
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.5e-61 238.8 223 57.4
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.9e-59 233.4 204 58.3
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-57 227.3 209 56.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-57 226.9 240 53.8
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 5.1e-57 225.3 211 55.0
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.5e-56 223.8 220 54.1
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.5e-56 223.8 211 55.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.2e-55 218.0 252 48.0
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.1e-54 217.6 227 52.0
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 4.1e-54 215.7 209 53.6
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.5e-53 213.8 210 55.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.4e-53 212.6 245 48.6
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 4.5e-53 212.2 248 50.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 8.5e-52 208.0 218 50.9
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.2e-50 204.1 218 51.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.1e-50 203.4 257 45.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.7e-50 203.0 208 54.3
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 3.6e-50 202.6 218 52.8
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 6.1e-50 201.8 211 51.7
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.8e-49 200.3 222 50.9
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.9e-49 199.1 203 54.2
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.9e-49 199.1 218 49.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.1e-48 197.6 218 50.9
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.0e-48 196.8 213 50.7
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.4e-48 195.7 257 45.1
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.4e-48 195.7 217 48.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 7.4e-48 194.9 218 49.5
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 4.8e-47 192.2 213 50.2
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.3e-47 191.8 214 50.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 6.3e-47 191.8 247 47.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 8.2e-47 191.4 218 51.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.4e-46 189.9 247 47.4
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 3.1e-46 189.5 232 48.7
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 7.0e-46 188.3 247 44.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 3.5e-45 186.0 209 49.3
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 3.5e-45 186.0 211 48.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 4.5e-45 185.7 243 44.9
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.9e-44 183.0 217 48.8
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.9e-43 180.3 246 45.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-43 180.3 245 45.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.2e-43 179.1 221 49.8
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.2e-42 177.6 211 47.9
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.1e-42 176.8 211 47.9
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 2.7e-42 176.4 119 74.8
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.7e-42 176.4 216 44.9
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 4.7e-42 175.6 208 49.0
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.4e-41 174.1 218 46.3
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.4e-41 174.1 218 46.3
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.0e-41 172.9 207 49.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 5.2e-41 172.2 205 48.3
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 5.2e-41 172.2 214 47.7
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.7e-41 171.8 205 47.8
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.8e-41 171.4 243 45.3
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.1e-40 171.0 218 45.0
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.5e-40 170.6 221 48.4
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 2.0e-40 170.2 212 46.2
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 2.0e-40 170.2 212 46.2
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.3e-40 169.5 226 45.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.3e-40 169.5 221 47.5
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 4.4e-40 169.1 243 42.4
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 7.5e-40 168.3 221 43.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 9.7e-40 167.9 218 44.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.7e-39 167.2 227 45.8
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.8e-39 166.4 214 46.3
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.8e-39 166.4 234 43.6
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 3.7e-39 166.0 222 48.2
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 4.8e-39 165.6 220 46.4
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 4.8e-39 165.6 210 44.3
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.1e-38 164.5 218 45.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.1e-38 164.5 210 49.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.1e-38 164.5 210 45.7
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.4e-38 164.1 237 44.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.4e-38 163.3 219 46.1
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 3.1e-38 162.9 213 45.1
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 4.1e-38 162.5 210 45.7
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 7.0e-38 161.8 330 34.5
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 9.1e-38 161.4 213 46.0
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.5e-37 159.5 212 44.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.0e-36 157.9 215 47.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.3e-36 157.5 205 44.9
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.3e-36 157.5 234 40.2
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-35 154.5 211 43.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.2e-35 152.9 214 43.9
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 9.4e-35 151.4 234 40.2
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.1e-34 148.7 222 43.2
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 3.0e-33 146.4 222 41.9
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.0e-32 143.7 217 44.2
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 9.8e-32 141.4 222 43.7
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.4e-30 135.6 209 42.6
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 9.1e-30 134.8 250 39.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.2e-29 134.4 223 39.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 2.5e-27 126.7 211 39.3
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.1e-26 122.1 209 37.8
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.2e-25 119.0 208 38.5
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.8e-25 118.6 215 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 3.7e-23 112.8 210 39.0
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 8.3e-23 111.7 196 38.3
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.4e-22 110.9 225 35.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.5e-21 106.3 129 47.3
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.5e-19 100.9 94 56.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 4.3e-19 99.4 216 31.9
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 5.6e-19 99.0 215 32.6
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.8e-18 96.7 199 34.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 2.8e-18 96.7 232 32.3
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 4.4e-16 89.4 221 30.8
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.1e-11 74.7 58 56.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 9.8e-08 61.6 43 65.1


User provided reference genes

Program Settings