Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0188900 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.5e-216 754.6 357 100.0
RhsimUnG0144900 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.4e-214 746.5 357 99.2
RhsimUnG0032600 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.4e-211 737.6 357 97.8
RhsimUnG0032700 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.4e-211 737.6 357 97.8
RhsimUnG0144700 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.2e-208 729.6 357 97.8
Rhsim05G0023100 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.0e-167 593.6 359 82.7
Rhsim05G0023000 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.3e-153 543.9 365 75.6
RhsimUnG0032500 Rhododendron simsii HOM05D009487 ORTHO05D011434 8.7e-143 510.8 364 72.3
RhsimUnG0144600 Rhododendron simsii HOM05D009487 ORTHO05D011434 8.7e-143 510.8 364 72.0
Rhsim05G0150400 Rhododendron simsii HOM05D009487 ORTHO05D011434 6.3e-117 424.9 314 70.4
RhsimUnG0188800 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.3e-102 375.9 313 64.5
Rhsim05G0023300 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.2e-89 332.4 402 50.2
Hma1.2p1_0071F.1_g037920 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 7.4e-33 145.6 324 34.6
Hma1.2p1_0071F.1_g037940 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 1.8e-31 141.0 327 33.0
TAR371G0718 Trochodendron aralioides HOM05D009487 ORTHO05D011434 3.5e-27 126.7 346 30.3
Rhsim13G0006900 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.0e-26 125.2 316 30.1
DCAR_025206 Daucus carota HOM05D009487 ORTHO05D011434 1.3e-24 118.2 313 28.8
Nn1g09219 Nelumbo nucifera HOM05D009487 ORTHO05D011434 1.8e-23 114.4 310 29.0
DCAR_005359 Daucus carota HOM05D009487 ORTHO05D011434 2.2e-21 107.5 323 26.6
DCAR_025207 Daucus carota HOM05D009487 ORTHO05D011434 9.3e-20 102.1 304 26.3
CSS0036745 Camellia sinensis var. sinensis HOM05D009487 ORTHO05D011434 4.6e-19 99.8 189 32.8
Aqoxy2G00485 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 7.9e-19 99.0 303 28.4
Lj9C465T16 Lonicera japonica HOM05D009487 ORTHO05D011434 3.0e-18 97.1 390 25.1
Nn2g13898 Nelumbo nucifera HOM05D009487 ORTHO05D011434 6.7e-18 95.9 184 33.2
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 1.9e-17 94.4 367 24.3
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 1.9e-17 94.4 367 24.3
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 1.9e-17 94.4 367 24.3
Aqoxy2G04015 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 7.4e-17 92.4 337 27.3
DCAR_025205 Daucus carota HOM05D000041 ORTHO05D008933 9.7e-17 92.0 134 37.3
Aqoxy2G04013 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.8e-15 87.8 337 27.0
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 9.0e-15 85.5 300 26.7
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 9.0e-15 85.5 174 30.5
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 1.2e-14 85.1 175 30.9
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 2.6e-14 84.0 300 26.0
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 2.6e-14 84.0 174 32.2
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.3e-13 81.6 283 28.6
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 1.7e-13 81.3 173 28.9
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.9e-13 80.5 174 31.6
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 3.8e-13 80.1 207 29.5
DCAR_025209 Daucus carota HOM05D009487 ORTHO05D011434 6.5e-13 79.3 98 37.8
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 6.5e-13 79.3 174 31.6
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 8.5e-13 79.0 174 31.0
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.5e-13 79.0 130 34.6
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 1.1e-12 78.6 174 31.0
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.1e-12 78.6 172 29.7
Aqoxy4G00872 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.4e-12 78.2 130 38.5
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 1.4e-12 78.2 207 27.1
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 1.4e-12 78.2 207 27.1
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 1.9e-12 77.8 174 29.9
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 1.9e-12 77.8 175 28.6
TAR369G0559 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.9e-12 77.8 226 28.3
TAR369G0746 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.9e-12 77.8 226 28.3
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 3.2e-12 77.0 175 28.6
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 4.2e-12 76.6 174 31.6
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 5.5e-12 76.3 199 30.7
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 7.2e-12 75.9 260 25.4
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 9.3e-12 75.5 210 27.1
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 9.3e-12 75.5 207 26.6
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.3e-12 75.5 286 25.9
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 1.2e-11 75.1 174 28.7
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.6e-11 74.7 177 31.6
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 1.6e-11 74.7 177 31.6
Lsat_1_v5_gn_8_77420 Lactuca sativa HOM05D001286 ORTHO05D000440 1.6e-11 74.7 174 28.2
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 2.1e-11 74.3 174 28.7
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 2.1e-11 74.3 208 27.9
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 2.1e-11 74.3 208 27.9
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 2.1e-11 74.3 214 28.0
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 2.7e-11 73.9 207 27.1
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 3.6e-11 73.6 174 29.3
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 3.6e-11 73.6 210 26.7
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 3.6e-11 73.6 175 29.7
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 4.6e-11 73.2 174 29.9
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 6.1e-11 72.8 176 27.8
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 6.1e-11 72.8 175 28.6
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 7.9e-11 72.4 174 29.3
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 7.9e-11 72.4 170 28.2
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 1.0e-10 72.0 175 28.0
Carub.0006s3153 Capsella rubella HOM05D001286 ORTHO05D000440 1.0e-10 72.0 181 29.3
Peaxi162Scf00404g00218 Petunia axillaris HOM05D001286 ORTHO05D000440 1.0e-10 72.0 175 27.4
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.0e-10 72.0 207 27.5
TAR376G1075 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.3e-10 71.6 325 25.5
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 1.8e-10 71.2 200 27.5
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 1.8e-10 71.2 174 28.2
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 2.3e-10 70.9 201 27.4
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 2.3e-10 70.9 198 25.8
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 2.3e-10 70.9 174 27.6
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 2.3e-10 70.9 174 31.0
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 3.9e-10 70.1 172 29.7
Aqoxy2G00209 Aquilegia oxysepala HOM05D009487 ORTHO05D011434 5.1e-10 69.7 169 28.4
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 5.1e-10 69.7 191 26.7
Lj9C465T15 Lonicera japonica HOM05D009487 ORTHO05D011434 5.1e-10 69.7 276 25.4
TAR636G2462 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.1e-10 69.7 128 33.6
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 6.7e-10 69.3 175 28.0
TAR636G2415 Trochodendron aralioides HOM05D001286 ORTHO05D000440 6.7e-10 69.3 183 25.7
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.1e-09 68.6 207 26.1
TAR636G3684 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.1e-09 68.6 186 30.1
CSS0034097 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 1.5e-09 68.2 133 31.6
Dinv14513 Davidia involucrata HOM05D008995 ORTHO05D000074 1.5e-09 68.2 176 26.7
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.5e-09 68.2 207 26.1
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 1.5e-09 68.2 207 26.1
TPR.G23322 Trifolium pratense HOM05D001286 ORTHO05D000440 1.5e-09 68.2 174 28.2
Dinv05663 Davidia involucrata HOM05D008995 ORTHO05D000074 2.5e-09 67.4 176 26.7
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 2.5e-09 67.4 174 27.0
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 2.5e-09 67.4 170 27.6
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 4.3e-09 66.6 207 26.1
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 4.3e-09 66.6 228 26.3
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 4.3e-09 66.6 206 28.2
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 4.3e-09 66.6 173 28.3
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 4.3e-09 66.6 206 28.2
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 4.3e-09 66.6 173 28.3
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 5.7e-09 66.2 200 29.5
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 5.7e-09 66.2 292 24.3
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 5.7e-09 66.2 205 27.3
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 5.7e-09 66.2 205 27.3
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 5.7e-09 66.2 174 26.4
TAR636G3329 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.7e-09 66.2 211 27.5
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 7.4e-09 65.9 209 26.3
Thhalv10029466m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.4e-09 65.9 172 27.9
AL5G37800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 9.7e-09 65.5 184 27.2
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 9.7e-09 65.5 205 27.3
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 9.7e-09 65.5 171 28.7
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 9.7e-09 65.5 204 28.9
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 9.7e-09 65.5 372 23.7
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 9.7e-09 65.5 170 27.6
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 1.7e-08 64.7 262 25.2
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 1.7e-08 64.7 262 25.2
Lj2g0018976 Lotus japonicus HOM05D008995 ORTHO05D000074 1.7e-08 64.7 168 25.6
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 1.7e-08 64.7 175 25.7
THA.LOC104816392 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 1.7e-08 64.7 131 32.8
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 2.2e-08 64.3 175 26.9
ATR0851G001 Amborella trichopoda HOM05D001286 ORTHO05D000440 2.8e-08 63.9 178 23.6
AT1G49360 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 2.8e-08 63.9 200 26.0
A09p10860 Brassica napus HOM05D001286 ORTHO05D000440 2.8e-08 63.9 262 24.8
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 2.8e-08 63.9 177 29.4
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 2.8e-08 63.9 177 29.4
MBI14_g22986_MAGBIO Magnolia biondii HOM05D001286 ORTHO05D000440 2.8e-08 63.9 192 26.0
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 3.7e-08 63.5 177 26.6
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 4.8e-08 63.2 171 28.7
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 4.8e-08 63.2 262 24.8
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 4.8e-08 63.2 182 28.0
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 6.3e-08 62.8 205 26.8
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.3e-08 62.8 170 29.4
TAR376G0134 Trochodendron aralioides HOM05D001286 ORTHO05D000440 8.2e-08 62.4 341 23.8
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 1.1e-07 62.0 206 27.7
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.1e-07 62.0 177 28.8
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 1.4e-07 61.6 207 25.1
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.4e-07 61.6 129 28.7
A09p10830 Brassica napus HOM05D001286 ORTHO05D000440 1.8e-07 61.2 175 29.1
CARHR216300 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.4e-07 60.8 175 28.6
Ciclev10017666m.g Citrus clementina HOM05D000151 ORTHO05D000074 2.4e-07 60.8 180 27.8
Lsat_1_v5_gn_2_5520 Lactuca sativa HOM05D000151 ORTHO05D000074 3.1e-07 60.5 129 32.6
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.1e-07 60.1 123 30.1
AT4G12382 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 5.3e-07 59.7 135 30.4
MD13G1035900 Malus domestica HOM05D008995 ORTHO05D000074 5.3e-07 59.7 175 26.3
Sp5g06085 Schrenkiella parvula HOM05D001286 ORTHO05D000440 5.3e-07 59.7 156 25.6
TAR628G1131 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.3e-07 59.7 327 23.5
Ciclev10001350m.g Citrus clementina HOM05D000151 ORTHO05D000074 6.9e-07 59.3 133 30.1
FvH4_3g27200 Fragaria vesca HOM05D008995 ORTHO05D000074 6.9e-07 59.3 179 26.8
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 6.9e-07 59.3 206 27.2
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 9.1e-07 58.9 204 24.5
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 9.1e-07 58.9 148 29.7
FAN11G1982 Fragaria x ananassa HOM05D008995 ORTHO05D000074 9.1e-07 58.9 179 26.8
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 9.1e-07 58.9 151 25.8
AL6G43900 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.2e-06 58.5 231 25.1
AT4G10695 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.2e-06 58.5 158 30.4
CANSAT01G2492 Cannabis sativa HOM05D008995 ORTHO05D000074 1.2e-06 58.5 173 26.6
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.2e-06 58.5 187 27.3
Duzib114G0876 Durio zibethinus HOM05D001286 ORTHO05D000440 1.2e-06 58.5 281 25.3
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.2e-06 58.5 129 26.4
Aqoxy7G03842 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.5e-06 58.2 136 27.9
MD17G1018900 Malus domestica HOM05D007346 ORTHO05D009044 1.5e-06 58.2 177 27.1
Atru.chr5.110 Acer truncatum HOM05D001286 ORTHO05D000440 4.5e-06 56.6 321 21.5
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.5e-06 56.6 125 28.8
COL.COLO4_29554 Corchorus olitorius HOM05D008995 ORTHO05D000074 5.9e-06 56.2 370 23.8
Aqoxy5G01074 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 7.7e-06 55.8 145 27.6
FAN16G1355 Fragaria x ananassa HOM05D008995 ORTHO05D000074 7.7e-06 55.8 177 27.1
RcHm_v2.0_Chr4g0434481 Rosa chinensis HOM05D008995 ORTHO05D000074 7.7e-06 55.8 171 25.1
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.7e-06 55.8 176 26.1


User provided reference genes

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