Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.7e-112 407.1 202 100.0
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.5e-111 404.1 202 99.5
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 5.8e-67 258.1 191 72.3
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 6.4e-66 254.6 142 88.7
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 8.3e-66 254.2 142 88.0
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 3.2e-65 252.3 146 82.2
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 1.2e-64 250.4 179 69.8
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 6.0e-64 248.1 157 77.1
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.3e-63 246.9 146 82.2
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.3e-63 246.9 170 72.9
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 3.0e-63 245.7 149 81.2
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 3.9e-63 245.4 148 80.4
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 5.0e-63 245.0 149 79.2
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 8.6e-63 244.2 147 78.9
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 8.6e-63 244.2 149 80.5
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.5e-62 243.4 148 77.0
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 1.5e-62 243.4 142 82.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.5e-62 243.4 142 83.1
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.5e-62 243.4 147 80.3
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.9e-62 243.0 149 79.9
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 3.3e-62 242.3 145 79.3
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 4.3e-62 241.9 149 79.2
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 5.6e-62 241.5 142 78.9
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 7.3e-62 241.1 148 76.4
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 9.5e-62 240.7 148 75.7
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.2e-61 240.4 149 79.2
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.6e-61 240.0 149 79.9
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 3.6e-61 238.8 165 70.9
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.6e-61 238.8 148 77.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.4e-60 236.9 145 79.3
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.8e-60 236.5 148 75.7
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.8e-60 236.5 186 64.0
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 2.3e-60 236.1 157 75.2
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 2.3e-60 236.1 148 75.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 6.8e-60 234.6 146 76.0
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 8.9e-60 234.2 146 76.0
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.6e-59 232.6 146 75.3
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.6e-59 232.6 146 75.3
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 5.8e-59 231.5 149 73.8
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 7.5e-59 231.1 145 75.2
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 9.8e-59 230.7 145 75.2
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 1.7e-58 229.9 163 66.9
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.2e-58 229.6 150 76.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 3.7e-58 228.8 144 74.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.7e-58 228.8 148 73.6
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 4.9e-58 228.4 147 76.2
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.4e-57 226.9 143 75.5
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.4e-57 226.9 145 73.1
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.4e-57 226.9 147 71.4
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.2e-57 225.7 148 72.3
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 3.2e-57 225.7 146 73.3
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 4.1e-57 225.3 149 71.1
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 4.1e-57 225.3 145 72.4
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 4.1e-57 225.3 144 74.3
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 4.1e-57 225.3 142 73.9
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 5.4e-57 224.9 139 78.4
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 9.2e-57 224.2 145 72.4
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.2e-56 223.8 145 71.7
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 2.1e-56 223.0 149 70.5
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.1e-56 223.0 142 73.9
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 2.7e-56 222.6 146 71.2
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 4.6e-56 221.9 152 71.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 6.0e-56 221.5 145 73.1
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 7.8e-56 221.1 149 69.1
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.3e-55 219.5 173 63.6
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 3.0e-55 219.2 179 63.7
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 3.0e-55 219.2 147 69.4
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 8.6e-55 217.6 132 81.1
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 1.9e-54 216.5 146 69.9
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.5e-54 216.1 187 58.8
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 2.8e-53 212.6 146 65.8
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.2e-53 211.5 146 69.9
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 6.2e-53 211.5 174 60.3
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.8e-52 208.0 146 68.5
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.8e-52 208.0 146 68.5
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.9e-52 207.6 146 68.5
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-51 206.8 146 67.8
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.5e-51 206.8 206 55.3
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 5.8e-51 204.9 146 67.8
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 5.8e-51 204.9 165 62.4
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 2.9e-50 202.6 145 66.2
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.4e-49 200.3 147 69.4
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.4e-49 199.5 145 73.1
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 1.0e-47 194.1 148 63.5
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.0e-47 194.1 147 64.6
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 6.6e-47 191.4 112 83.0
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.9e-46 189.9 146 67.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.8e-45 186.0 170 57.6
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.4e-42 174.9 146 55.5
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.4e-42 174.9 146 55.5
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 3.2e-41 172.6 144 60.4
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.6e-40 170.2 146 55.5
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 3.0e-39 166.0 119 71.4
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 3.0e-39 166.0 110 71.8
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 9.9e-35 151.0 90 78.9
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.2e-32 144.1 145 49.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.5e-30 137.1 163 44.8
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 4.5e-27 125.6 113 56.6
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 3.5e-24 115.9 181 38.7
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 4.3e-22 109.0 84 63.1
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 2.1e-21 106.7 97 57.7
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.4e-17 94.0 184 29.9
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.5e-17 93.2 144 45.1
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.2e-17 92.8 157 40.1
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 2.5e-14 83.2 141 34.0
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 6.9e-12 75.1 122 29.5
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 9.0e-12 74.7 51 72.5
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.3e-10 70.9 50 68.0
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.4e-09 67.4 76 46.1
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 5.5e-09 65.5 43 76.7
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.5e-08 62.8 48 54.2
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.9e-08 61.6 54 57.4
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 3.9e-07 59.3 32 84.4


User provided reference genes

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