Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.2e-65 253.1 131 100.0
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 8.1e-46 187.2 166 65.1
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 6.9e-29 131.0 207 43.0
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 7.4e-23 110.9 201 38.8
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 7.4e-23 110.9 201 38.8
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.1e-21 105.5 215 37.2
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 2.0e-20 102.8 159 42.8
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 7.6e-20 100.9 204 37.3
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 2.9e-19 99.0 182 38.5
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 3.5e-17 92.0 187 36.4
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 3.5e-17 92.0 85 61.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 6.0e-17 91.3 186 37.6
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.0e-17 91.3 157 40.1
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.0e-17 91.3 157 40.1
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 7.9e-17 90.9 127 44.9
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 3.0e-16 89.0 205 34.6
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 3.9e-16 88.6 186 34.4
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 8.7e-16 87.4 212 35.4
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.1e-15 87.0 217 35.0
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.3e-15 85.5 186 33.3
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.4e-15 84.3 186 33.3
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 7.4e-15 84.3 202 31.7
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.3e-14 83.6 185 34.6
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.3e-14 83.6 163 35.6
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.3e-14 83.6 203 34.0
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 3.7e-14 82.0 207 33.8
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 4.8e-14 81.6 189 33.3
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 4.8e-14 81.6 208 34.1
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 6.3e-14 81.3 165 35.8
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 1.4e-13 80.1 211 34.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.4e-13 80.1 186 32.8
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.8e-13 79.7 174 32.8
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 4.1e-13 78.6 180 32.8
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.1e-13 78.6 172 34.3
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 5.3e-13 78.2 211 32.2
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 6.9e-13 77.8 157 33.8
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.0e-12 76.3 181 33.7
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.6e-12 75.9 211 28.9
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 3.4e-12 75.5 171 32.2
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 4.5e-12 75.1 212 32.5
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 7.6e-12 74.3 152 32.9
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 7.6e-12 74.3 152 32.9
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.0e-11 73.9 133 38.3
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.0e-11 73.9 207 30.9
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 1.3e-11 73.6 194 32.0
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.7e-11 73.2 185 30.8
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 1.7e-11 73.2 186 33.9
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.2e-11 72.8 211 29.4
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.2e-11 72.8 176 31.2
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 2.9e-11 72.4 172 31.4
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 3.8e-11 72.0 175 29.7
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 5.0e-11 71.6 204 29.9
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 6.5e-11 71.2 194 31.4
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 8.4e-11 70.9 208 31.2
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 8.4e-11 70.9 217 31.8
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.1e-10 70.5 39 82.1
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.1e-10 70.5 186 32.3
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.1e-10 70.5 152 31.6
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.4e-10 70.1 207 30.4
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.4e-10 70.1 40 80.0
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.4e-10 70.1 182 32.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 2.5e-10 69.3 209 32.1
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 4.2e-10 68.6 40 77.5
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 4.2e-10 68.6 143 34.3
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.5e-10 68.2 193 31.1
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 5.5e-10 68.2 40 75.0
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 5.5e-10 68.2 79 53.2
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.2e-10 67.8 202 30.2
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.2e-10 67.8 202 30.2
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 9.3e-10 67.4 175 29.1
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 1.2e-09 67.0 45 73.3
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.2e-09 67.0 39 82.1
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.2e-09 67.0 39 82.1
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.6e-09 66.6 188 29.8
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-09 66.6 201 29.4
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-09 66.6 202 29.7
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 2.1e-09 66.2 37 81.1
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 2.7e-09 65.9 152 30.9
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 4.6e-09 65.1 45 68.9
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 6.1e-09 64.7 213 29.6
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 7.9e-09 64.3 161 31.7
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 7.9e-09 64.3 179 29.1
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.3e-08 63.5 161 29.8
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.3e-08 63.5 153 32.7
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 1.8e-08 63.2 191 27.7
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.8e-08 63.2 206 29.6
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.8e-08 63.2 81 49.4
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 3.9e-08 62.0 157 31.8
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 5.1e-08 61.6 184 28.3
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 5.1e-08 61.6 206 28.6
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 5.1e-08 61.6 42 66.7
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 4.3e-07 58.5 38 71.1
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 4.3e-07 58.5 34 79.4
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 4.3e-07 58.5 32 81.2
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 5.7e-07 58.2 39 74.4
Lalb_Chr21g0313491 Lupinus albus HOM05D007188 ORTHO05D009102 7.4e-07 57.8 40 62.5
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 9.7e-07 57.4 214 29.4
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 2.2e-06 56.2 70 50.0


User provided reference genes

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