Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.2e-39 164.1 92 100.0
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.1e-32 142.1 79 100.0
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.4e-20 102.1 71 84.5
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.1e-20 101.3 71 84.5
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.4e-20 100.9 71 83.1
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.0e-20 100.5 72 80.6
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.0e-19 99.0 71 81.7
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-19 98.6 71 78.9
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 5.9e-19 97.4 69 81.2
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 7.7e-19 97.1 71 77.5
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.7e-19 97.1 71 77.5
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.7e-19 97.1 69 79.7
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.0e-18 96.7 71 77.5
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.0e-18 96.7 71 80.3
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.3e-18 96.3 71 78.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.7e-18 95.9 71 77.5
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.7e-18 95.9 71 77.5
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.7e-18 95.9 71 76.1
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.2e-18 95.5 69 78.3
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.9e-18 95.1 71 77.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.9e-18 95.1 81 71.6
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.9e-18 95.1 71 78.9
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.9e-18 95.1 71 76.1
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.8e-18 94.7 67 79.1
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.8e-18 94.7 71 76.1
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 5.0e-18 94.4 71 78.9
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.0e-18 94.4 71 74.6
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 6.5e-18 94.0 69 78.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 8.5e-18 93.6 71 78.9
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 8.5e-18 93.6 71 77.5
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 8.5e-18 93.6 69 76.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-17 92.8 68 77.9
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.5e-17 92.8 71 77.5
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.5e-17 92.8 71 77.5
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-17 92.8 71 74.6
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.9e-17 92.4 71 76.1
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.5e-17 92.0 71 76.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.5e-17 92.0 71 76.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 3.2e-17 91.7 71 76.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.2e-17 91.7 71 76.1
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.2e-17 91.7 71 77.5
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.2e-17 91.3 67 76.1
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.2e-17 91.3 68 77.9
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.2e-17 91.3 68 77.9
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.5e-17 90.9 71 73.2
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 5.5e-17 90.9 67 77.6
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 7.2e-17 90.5 71 74.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 7.2e-17 90.5 71 73.2
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 9.5e-17 90.1 69 76.8
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 9.5e-17 90.1 71 76.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.2e-16 89.7 69 76.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.6e-16 89.4 68 76.5
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.1e-16 89.0 67 80.6
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.1e-16 89.0 71 74.6
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.8e-16 88.6 71 73.2
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 4.7e-16 87.8 70 72.9
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 6.1e-16 87.4 66 77.3
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 8.0e-16 87.0 69 72.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.0e-15 86.7 71 71.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.8e-15 85.9 69 71.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.8e-15 85.9 69 71.0
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.8e-15 85.9 66 72.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 3.0e-15 85.1 67 74.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.0e-15 85.1 69 71.0
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.2e-15 84.3 71 69.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 5.2e-15 84.3 71 69.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 6.8e-15 84.0 67 73.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 8.8e-15 83.6 69 68.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.8e-15 83.6 63 76.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.5e-14 82.8 65 73.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 5.7e-14 80.9 68 67.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.7e-14 80.9 69 66.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 5.7e-14 80.9 65 72.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 5.7e-14 80.9 70 68.6
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.3e-13 79.7 65 75.4
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 6.3e-13 77.4 78 65.4
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 8.3e-13 77.0 62 75.8
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-12 76.6 70 65.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.1e-12 76.6 59 78.0
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.8e-12 75.9 66 65.2
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 2.4e-12 75.5 66 65.2
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 5.4e-12 74.3 62 72.6
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 7.0e-12 73.9 68 60.3
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 7.0e-12 73.9 68 60.3
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 7.0e-12 73.9 62 72.6
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.2e-12 73.6 66 59.1
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.2e-12 73.6 66 59.1
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.2e-11 73.2 56 80.4
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.6e-11 72.8 66 63.6
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-11 72.8 70 61.4
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.6e-11 72.8 70 61.4
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.0e-11 72.4 65 63.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 2.0e-11 72.4 70 61.4
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 2.0e-11 72.4 70 61.4
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 2.0e-11 72.4 70 61.4
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 3.5e-11 71.6 63 69.8
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 7.8e-11 70.5 65 61.5
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.0e-10 70.1 67 64.2
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 5.6e-09 64.3 76 55.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 5.6e-09 64.3 66 63.6
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.1e-08 62.4 64 57.8
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 3.6e-08 61.6 71 53.5
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.1e-08 60.8 66 54.5
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.1e-08 60.8 69 52.2
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 8.0e-08 60.5 66 54.5
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.0e-07 60.1 72 48.6
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.3e-07 58.9 72 51.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.0e-07 58.5 64 54.7
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.0e-07 58.2 74 52.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.0e-07 58.2 68 52.9
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 4.0e-07 58.2 68 51.5
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.2e-07 57.8 74 47.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.2e-07 57.8 74 47.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 6.8e-07 57.4 64 54.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 8.9e-07 57.0 58 56.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-07 57.0 64 51.6
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.9e-07 57.0 60 56.7
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.2e-06 56.6 66 50.0
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.2e-06 56.6 50 68.0
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.5e-06 56.2 65 56.9
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-06 56.2 64 51.6
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 2.0e-06 55.8 65 50.8
SalBow6G2712 Salvia bowleyana HOM05D008947 ORTHO05D010748 2.6e-06 55.5 42 81.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.6e-06 55.5 64 53.1
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.4e-06 54.7 66 51.5
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.7e-06 54.3 64 50.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 7.5e-06 53.9 60 50.0


User provided reference genes

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